Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre7g02479 | ATGGATTGTACACCTGCTAGAAAGACGCAGAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACATTTTAGATCCTGATAGGCCCAAAAACGATAAAGCAACCATTCTAGGCGATACAGTTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTAAAAGATGAATATACTATGCTAAATGAAGAATCTCGTGAGTTGACCCAGGAGAAAAATGATATCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAATTTGAATAACCAGTATCAGCTTCAACTAAGGACTATGTATCCATGGCCTGCAATGGATCACTCCGTTATGATGGCTCCACCAACATATCCGTATCCAGTCCCAATGCCAGTACCTCCTGGTTCAATTCCCATGCAGCCGTACCCCTACTATGCCAATCAACATCCTGCAGTCATCCCTAACCCGTGTTCAACATATGTTCCTTTTTTAGCCCCGAATACAATTGTTGAACAACAATCCACTCAATACGTATCCCCGCCTCTTCATCCAGGTAGCCGGTCCCATGCATCAGGAAAACAAGACTCCAAAAACAAATCATCGAGGGAGAGCAAGGCTCAAAGAAATGAGGATTCTAATGATGTAGCCACGGACCTTGAGTTGAAGACTCCCGGGTCTTCTGCAGAACAGGATTTATCATCCGCACAAAAAAAATCTAGTAAGTCGTCAAGGAAGGAAAACAGTTTCACAGAAGGTAGTTCGTTAGGCAAGTGTTCTTCATCTCACAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGGGAAGAAAGTCTACTGAATGA | 849 | 0.4264 | MDCTPARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTVQLLKDLTSQVSKLKDEYTMLNEESRELTQEKNDIREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPPTYPYPVPMPVPPGSIPMQPYPYYANQHPAVIPNPCSTYVPFLAPNTIVEQQSTQYVSPPLHPGSRSHASGKQDSKNKSSRESKAQRNEDSNDVATDLELKTPGSSAEQDLSSAQKKSSKSSRKENSFTEGSSLGKCSSSHSVQDSSSSSVVGGRKSTE | 282 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre7g02479 | 282 | MobiDBLite | consensus disorder prediction | 221 | 239 | - | - | |
Trre7g02479 | 282 | Pfam | Helix-loop-helix DNA-binding domain | 7 | 56 | IPR011598 | GO:0046983 | |
Trre7g02479 | 282 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 6 | 56 | IPR011598 | GO:0046983 | |
Trre7g02479 | 282 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 5 | 76 | IPR036638 | GO:0046983 | |
Trre7g02479 | 282 | CDD | bHLH_AtILR3_like | 11 | 85 | - | - | |
Trre7g02479 | 282 | MobiDBLite | consensus disorder prediction | 177 | 282 | - | - | |
Trre7g02479 | 282 | MobiDBLite | consensus disorder prediction | 248 | 282 | - | - | |
Trre7g02479 | 282 | MobiDBLite | consensus disorder prediction | 192 | 219 | - | - | |
Trre7g02479 | 282 | Gene3D | - | 6 | 89 | IPR036638 | GO:0046983 | |
Trre7g02479 | 282 | SMART | finulus | 12 | 62 | IPR011598 | GO:0046983 | |
Trre7g02479 | 282 | Coils | Coil | 53 | 108 | - | - | |
Trre7g02479 | 282 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 2 | 280 | IPR044579 | GO:0003700|GO:0006879 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre7g02479 | Trre-Chr7 | 20400840 | 20402580 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre7g02479 | 1 | 279 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G19860 | 62.153 | 1.31e-97 | 287 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Trre7g02479 | HLH | 3.1e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre7g02479 | - | - | cam:101491902 | 462.225 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre7g02479 | 7 | 20400840 | 20402580 | Trre7g02479 | 7 | 20400840 | 20402580 | ECH |