Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02454 ATGAGATGCAATGGGTGTCGGGTACTTCGCAAAGGTTGCAGTGAAGACTGCATCATCAAACCTTGCCTTGAGTGGATCAGTTCTTCTGAATCTCAAGGTAATGCCACCCTCTTTCTAGCCAAATTCTATGGCCGAACCGGCTTGTTCAACCTCCTTGCTAAGGCTTCCGGTGAAAATTCCCAAGTTGTGTTCAAATCATTGTTGTACGAAGCTTCAGGTAGATTGATGAATCCCACTCATGGGGCACTAGGTTTATTTAGGACAGGACAATGGAACCGATGTGAAGCTGTGCTGGCTGGATCCAATATTAATGATGTTATAACTGTTGATGGACAAACATCATCCTTCGTTGTTGAAAATCATGTTCTTCCAACAACCTATGATATATGTCGCGTGGCAAGAGGTACCAACGTGGACATCAAAGAGAAAACTCAATTCAAGAGAGTTGGGTCAGTTTTCAAGCCTAAGTCGCGAGTTGGTTTGGTCAGCAAGGCTACACTTATGAGATTGGGTTTGGAGAGTGTGAAGTCGGAGCTCACTCTTAGCTTTAATTTCCAATCAAAAAATGACCTGAAAACATCTAGTTGTTAA 591 0.4298 MRCNGCRVLRKGCSEDCIIKPCLEWISSSESQGNATLFLAKFYGRTGLFNLLAKASGENSQVVFKSLLYEASGRLMNPTHGALGLFRTGQWNRCEAVLAGSNINDVITVDGQTSSFVVENHVLPTTYDICRVARGTNVDIKEKTQFKRVGSVFKPKSRVGLVSKATLMRLGLESVKSELTLSFNFQSKNDLKTSSC 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02454 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 157 - -
Trre7g02454 196 Pfam Lateral organ boundaries (LOB) domain 2 95 IPR004883 -
Trre7g02454 196 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02454 Trre-Chr7 20183226 20184365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02454 1 171 AS2 family AT1G68510 41.714 6.16e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre7g02454 LOB 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02454 - - mtr:25485496 239.195