Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02442 ATGGCTTTCATTCTTTGCTTCTTCTTTTTCTTTCTTGCTTCATCTGCCACCGCTTGTGATCGTTGCTTGCACCAATCCAAAGCTTCTTATTTCAACAAAGCTTCAGCTCTTTCATCTGGGGCATGTGGCTATGGTTCTTTAGCACTTGACTTTAGCGGTGGACACCTTGCAGCTGGTGTTTCTTCACTCTTCCATAATGGAGCTGGTTGTGGTGCTTGTTTTCAGGTAAGATGCAAGAACCAAGCAATATGCACAAAAGAAGGTACAAAAGTGGTATTAACCGATCTTAATCACAATAATCAAACTGATTTTGTTCTAAGTAGTAGAGCCTTCTCTGCCATGGCTCAAAAGGCTATGAGCCAACAAATTTTGAAGCTTGGCATTGTTGACATTGAATACAAAAGAGTACCTTGTGAGTACAAAAAACAAAATTTGGCTGTTCGTGTTGAAGAATCAAGCAAAAAATCAGATTATTTAGCAATTAAATTTTTGTATCAAGGTGGACAAACAGAGATAGTAGGTGTTGATGTTGCTCAGGTTGGATCGTCACAATGGACTTATATGAGCAGAAATCATGGGGCAGTGTGGGACACAAGTAGGGTTCCACAAGGGGCATTACAACTTAGGTTAGTGGTTACATCAGGGTTTGATGGAAAATGGATTTGGGCCAAAAAGGTTCTACCAGCTGATTGGAAAAATGGGGTGATATATGATTCTGATGTTCAGATTACAGATATTGCACAAGAGGGTTGTTCACAATGTGACGATGATACATGGTCATGA 783 0.3997 MAFILCFFFFFLASSATACDRCLHQSKASYFNKASALSSGACGYGSLALDFSGGHLAAGVSSLFHNGAGCGACFQVRCKNQAICTKEGTKVVLTDLNHNNQTDFVLSSRAFSAMAQKAMSQQILKLGIVDIEYKRVPCEYKKQNLAVRVEESSKKSDYLAIKFLYQGGQTEIVGVDVAQVGSSQWTYMSRNHGAVWDTSRVPQGALQLRLVVTSGFDGKWIWAKKVLPADWKNGVIYDSDVQITDIAQEGCSQCDDDTWS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02442 260 PANTHER EXPANSIN-B3 12 242 - -
Trre7g02442 260 Pfam Lytic transglycolase 57 133 IPR009009 -
Trre7g02442 260 SUPERFAMILY Barwin-like endoglucanases 8 141 IPR036908 -
Trre7g02442 260 Gene3D - 140 244 IPR036749 -
Trre7g02442 260 FunFam Expansin-like A2 140 244 - -
Trre7g02442 260 Gene3D - 12 139 IPR036908 -
Trre7g02442 260 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Trre7g02442 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Trre7g02442 260 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Trre7g02442 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Trre7g02442 260 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Trre7g02442 260 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Trre7g02442 260 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Trre7g02442 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Trre7g02442 260 SMART dpbb_1 57 133 IPR007112 -
Trre7g02442 260 CDD DPBB_EXLA_N 14 140 - -
Trre7g02442 260 Pfam Expansin C-terminal domain 146 228 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02442 Trre-Chr7 20080123 20082236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02442 5 254 Expansin Gene Family AT3G45960 64.683 7.68e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02442 - - gmx:100305884 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02442 7 20080123 20082236 Trre7g02442 7 20080123 20082236 ECH