Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02438 ATGCTTCAAAGCTTGGTCCCTCGTCCTCCTCTCACTTCCAAATCTAATAATATGAATGCCAAACGCGCCGAACGTGAGCACGACGACGCTGATGATTCCACCCTTCAGGAACAACCTTCTTTCAAAAGAGCTAACTACTCCGGCGAACAAACGGTGGCGGAACCCGAACAACACGACGAAGAACAAGCCTTCGAACCTGAAAACGAAGGCGAATCAACAGGTTTGAAACTCTTAGGGCTTTTGCTTCAATGCGCTGAGTGTGTTGCTATGGATAATCTCGATTTCGCCAACGACCTGTTACCGGAGATTACCGAGCTTTCTTCACCGTTCGGAACTTCGCCGGAGCGCGTTGGAGCTTATTTTGCACAGGCGTTACAAGCGCGTGTGGTGAGTTCTTGTCTCGGTAGTTACTCGCCGTTAACTGCTAAATCGGTAACGCTAACTCAGTCGCAAAGAATTTTCAACGCGTTTCAATCCTACAACTCGGTTTCACCGTTGGTGAAATTCTCTCACTTCACCGCTAATCAAGCAATTTTTCAAGCTGTGGACGGTGAGGATCGTATCCACATCATCGACCTCGATATCATGCAAGGACTTCAATGGCCAGGATTGTTCCACATCCTCGCTTCACGATCCAAGAAAATCCGCTCCGTTAGAATCACCGGTTTTGGTTCTTCTTCAGAGCTTCTAGAATCAACGGGAAGAAGACTCGCCGATTTCGCGAGTTCACTCGGTCTTCCGTTCGAGTTTCATCCAATTGAAGGTAAAATTGGAAGCGTAACTGAACCGAGTCAACTCGGTGTTAGACCAAACGAAGCAATCGTTGTTCACTGGATGCATCATTGCTTATACGATATAACCGGAAGCGATTTAGGAACGTTGAGATTGCTGAGTCAGCTCCGACCAAAACTAATCACCACCGTTGAACAGGATCTTAGCCACGCTGGTAGCTTCCTCGCGAGGTTTGTGGAAGCTTTGCATTATTACAGCGCGTTGTTCGACGCGCTTGGGGATGGATTGGGTGTGGATAGTGTTGAGAGGCATATGGTGGAGCAGCAACTGTTGGGGTGTGAGATAAGGAACATTATTGCCGTTGGTGGGCCCAAGAGGACTGGTGAGGTTAAAGTTGAGAGATGGGGGGATGAATTGAAACGGGTTGGGTTTCGACCCGTTTCTCTTCGGGGTAACCCGGCTGCACAAGCGAGTTTGTTGTTGGGGATGTTTCCTTGGAGAGGGTATACTTTGGTGGAAGAGAATGGTTCTCTCAAGCTTGGTTGGAAGGATCTTTCACTGTTGATTGCTTCTGCTTGGCAGCCATCGGATTTGATGACTTATACCGATTGA 1344 0.4821 MLQSLVPRPPLTSKSNNMNAKRAEREHDDADDSTLQEQPSFKRANYSGEQTVAEPEQHDEEQAFEPENEGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEITELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQAVDGEDRIHIIDLDIMQGLQWPGLFHILASRSKKIRSVRITGFGSSSELLESTGRRLADFASSLGLPFEFHPIEGKIGSVTEPSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGVDSVERHMVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLMTYTD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02438 447 MobiDBLite consensus disorder prediction 37 52 - -
Trre7g02438 447 Pfam GRAS domain family 79 438 IPR005202 -
Trre7g02438 447 MobiDBLite consensus disorder prediction 1 70 - -
Trre7g02438 447 MobiDBLite consensus disorder prediction 19 36 - -
Trre7g02438 447 MobiDBLite consensus disorder prediction 1 18 - -
Trre7g02438 447 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 57 433 IPR005202 -
Trre7g02438 447 ProSiteProfiles GRAS family profile. 68 438 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02438 Trre-Chr7 20026629 20027972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02438 18 441 GRAS Transcription Factor Family AT5G41920 65.501 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre7g02438 GRAS 5.9e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02438 - - gmx:100816249 756.518