Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02427 ATGGAATTCGTCGGAAAAACCGTTCGGAAAGAGGTGAACGGGGTTCGAATTCTCACCGGAACTGTCAAATCTTACGATTCTTCGTCCGGTTTGTTGGAGATCCTTTTCGAAGGCGGTCATTGTGAGAAGATGGAAGTTTCTGAGGTTGCTTCGCTGCTGGAAATTCAACCGGAGCTTTCTGAGGTCAAAGTTCAGGTCGGTCGGAAACCTAAAAAACGACGCCGTGTTGATCAGAGTGGTGAAACGACATCGAGTTCAGGTAATGTTAGTGATGATTTGGTGGCGGGTAGTGAATTTAGCGGGATTTTGAATGGTGATGATTCTAGTGGCGGGAATGATGCGGATGTTGTTGGTAATGTGAATGGGACTAGTGGGAGTGTAGAGAAACTAGGAAATGGAAATGGGTTTGGTTTAGGAGAGATTTTGAATTTGAATGAGAATGAGGGTGTTTCTGATAATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGATAATGGAATTTGTGTTAAAGATGGTATTGATTTGAATGCTAGGCTTAATTTGAATGAGGATATTAATCTGAATGATGCGTGTGATTCTGATTTGCCGCCTTTTAATAACGCGGGTAGTGTGGAGAGAAGAGATTGTATTGATTTGAATTTGGATGTGAGTGTTGAGGAGGGTGTGAACTTGGATGTGAATTCGGGAGGGGAAATTTTGCGGCGGGAATTTGATTTGAATGTGGGGGTGTGTGAAGAGGTTAAGGAAGCTCAGGGTTGTGCTGATGGAAATGGATATTCTGAGGTCGATGGTGAGATGGGGCAGATTCGAGAAGAAGAGTCGGATGTTAAGCACACATATATGGAAGCTGATGGTGGTTGTGGTAATTTGAACTGTACCTCGGATGCTATCAAATTGGAGGAACATCATGCTTCGGTCGAGAATATAGCTGAAGAAGGTTTGGTCGAGGAAAAGGAAGGTCATGATGACAAAGAAAATGTGGCGGCTATCGACTCTCTTCGGGTTTCGGATGCTGTTTCTGTTATGGAATGTGATTATGTTTCTTCGGAAGCTGCTGTTGCCGTAGTTAATCAATACCAAGATGATCCAGGAAGTCCACGCAAACAAGGAATTAGGCAAAGGAAGAGAAGAAAAGTGTCAGATAATCTAAATTCCACCCCGGACACGGCTTTGAGGAGGAGTTCTCGCCGGGCATCAGCGAGAAAAGAGGTTTCAAGTGCAGTATCAGGGAAGGGGACTGATGATCCTTTGTCATCCTTGGAAACAAGTGTAACAGAAGAAAAAACTCCGATGCCTGGAAATGAGAAATATGAACAGTTCAATGTTCCTATTCCGAAGCTGAAATTACCCCCCTCTTCTCAAAATTTGAATTTAGATGGCATCCCTGTCATTGAATTTTTTTCTGTTTATGCTTGTTTAAGATCATTCAGTACCTTGTTATTTTTGAGTCCGTTTGAGTTGGAAGATCTTGTAGCTGCACTTAAATCTGAAATCCCTAGTGTATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATTTGGAATTCCTTTCCAGTGAGGGTAGCCAATCTGCATCCATTTGCCTGAGGAATCTTAATTGGGATTTCTTGGACCTTGTCACTTGGCCCATGTTCATGGCCGAGTATCTTCTGATTCACAGTTCACAGTTTAAAACTAGTTTTGATGCTAACCACTCAATGTTCAGAACTAACTACTACAAACAACCTGTCACTTTGAAGCTTGAGATTCTTCAGTACCTGTGTGATGATATGATTGAAGCAGACACCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACAGAGAGTGGCATGGGTTTTGATCAGAATATTTATTTCGACACTTGCAAGAAAAAAAGAGCTGTAACAGATCTTTCTGGTGGATCTTGCTTGACTGAGGAGATTGCGGATGACACAACTGACTTGAACAGTGATGAATGTTGCCTTTGCAAGATGGATGGAAATTTAATATGTTGCGATGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTCGGGCTTGCAAGTGACAATCTGCCTGAAGGTGACTGGTATTGTCCCGAGTGTGCTATTGGCACACACCGGGCTTCGAGGAAATCACGAAGGTCACTCCGTGGAGCAGACTTGTTGGGGACGGATCCTCACGGCTGTCTTTACTTTGATAGCTGTGGTTACCTGTTAGTTTCAAACTCATCAGATGCGGGATCCTTGTTCAATTACTACCATAGAAATGATATACATGTTGTAATTGAAGTTCTAAAGTCTATGGATACTTCATATCGAGACTTATTACTGGCGATTTATAAGCATTGGGATATTCCGGCTGCCTTAAATGCAGGGGCTAGTAATTTGGCAGTCTTTAATCAAAGTTCCTGCAAGAACATGCAAATGACAGCTGAATATGACGCTATGCCTACATCTGTAGCACCTTTTACTTCTTCAGAAGAATTTATTGACAAGAATCTGGTTGATGATCAGAAAAAGTTGGAGAAAAATTCAACTATTGACTGTTGTAGTCATGATGGCCAAGATTTTCCAAAAGTTGGGAACCAATTAGACTCAACAATAGAAAGTCCTTGTATTGCATCAGAAGGATCAGCTGATACCGCACAAGTTAGCACTACCCCCTATACAGGCAATAAGGATTCATCACAAGCACCGTGTGGGACCGACTACATAAACTATTATAGCTTTGCCAGGGTGGCCTCATTAGTTGCACAGGAGTTGTTGATATGCAAGTCACAAGAAAAGATCAATAAAAATATTGTAATGACTGAAGAAGAAATAATTTCAGACCAAGCAAAGTCCATCATGAAGAAGTCCACCGACTTTTGTTGGCCAAGCATTCAAAACCTGAACGCAGCTGCCCAAAAGGAAAAATGTGGGTGGTGCTTTTCTTGCAAGGTTGCAAATGATGACAGAGATTGCTTGTACATTTCTATGGTGAAGCCTCTTTCGGAAGTGTCTAAAAGTGCTTCAGCTGGGCTTCATCCAATGAATATCCAGAATGGACATCTTAGAGAGATAATATGTAATATTTTCTCTCTTGAGGCTCGATTGCGGGGTCTTTTGTTGGGTCCATGGTTGAATCTGCATCAAACAGATCATTGGCATAATAATCTTTTGAAGTCATCTGACCTTCTTCCAGTTAAACGATTATTGCTTCTTTTGGAGTCCAATTTGAGTGATCGCGCACTTTCAGCTGATTGGTTAAAGCATGTGGATTCTGTAGTTACTATGGGCTCTGCTTCCCATATTGTGGTCAGTTCATCACGCGCATCCTCAAGGCAGGGCATTGGAAGGAAAAGAGCCAGGCAATCAGATATTGAATCCAGTTCATCTTCAAAGACTACTGGTGGTTTGGCAATGTATTGGTGGAGAGGTGGTAGGCTTTCCCGAAAGTTGTTTAATTGTAAGGTCCTGCCTCGCTCCTTTGTTACCAAGGCTGCTAGACAAGCTGGGTTTACAAAGATACCAGGTATTTTATATCCTGAAAATTCAGACTTTGCAAAGAGAAGCAGATGTGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTGGCTTTACAGGTTAGAGAACTCTATTCAAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTCTATGTATTGGACAAGGAATCAAAAAAATCAGTCAGGCTATTCAAAAAAGCAATTGTACGCAGGAAGTGCATGGATGGACAATCTGCGAAATACCTTATTGATTTTGGGAAGAGAAGGACTCTTCCAGATATTATTATTAAACATGGTTCTTTGTTGGAGCAACCCTCAAGTGAGAGGAAAAAATATTGGCTGAACGAGTCTTATGTTCCTTTGCATCTTTTAAAGAATTTTGAGGAAAAAAGAATCGTCCGCCAGTCTAATGATAAGAAAAATAGAAAAATTCTTGAGATTGGTATCGTAAAGAGGGATCCTCAACAAAGGGGTTTTTCATATTTGTTTGCCAGAATGGAAAGATCTGATTGTCATCAGTGTGGGCATTGCAAAAAAGACGTTCCAATAAGGGAAGCTGTGAGTTGCCTTCATTGCAAAGAATATTTCCACAAGAGGCATGTCAGGAAATCTGGTGGCACAAGAGCTACGGAATGCACATATTCATGTCACAGGTGCCAGGGTGGGTTGCATGTAAAGGCTAATACTAATAGAAATAAAGTTGGCTCAAAACGGCAGAAGATTCAATCACCGAATTGTAAAAGTACTCCTTTGGTTTGTAAATCAGTGAACCTTAAAGGCAATAAAAAGGCAGCAAGCAAGGTGCGGCAGGTGGTATCTCGAAACAATAAGAAGACCCCATCAATTGTACCTCTTCGTCGTTCTACTAGGAAAGCCAAATCCTTGTATTTGCGCAGTCAAATAATTGCAGGACGTAAAAAAGGAACACAAGGTAAAAAGAATGTAGGGCGTAAAAAAGGAAAGCAAAGTAAATCCAAGAAGGTGACATCTCAAAGGCCCAAGGAAACTACTGGTCAACCTAAGAAGTTTCCCGTTGCTACGTCACATAAGAAAAGAATACAACCTTCTAACAGTTACTGGCTTAATGGTCTTCGGTTTTCTAGAAAGCCAAATGATGACCGAGTAATGCTTTTTAAAGAGAAAAAGCATATTATCTCAGATGTTCTTACTGGTTCCTTTGATTGTCCTAAATGCCGCCTTTGTCATGGAGATGGATCCACTTCAAATTATATTGCTTGTGAAATCTGTGGAGATTGGTTTCATGGGGATGCTTTTGGTCTCACTGTAGAGAATGCTGAACAACTTATTGGGTTTAGGTGCCATGTTTGTCGTGGTAGGGATGCTCCGATCTGTCCCCATGCGAAGATTAATGCATTGTCTAACACTGAACCCAATGCTGCAATTGAGTGTGCAGAGGAATGA 4968 0.4102 MEFVGKTVRKEVNGVRILTGTVKSYDSSSGLLEILFEGGHCEKMEVSEVASLLEIQPELSEVKVQVGRKPKKRRRVDQSGETTSSSGNVSDDLVAGSEFSGILNGDDSSGGNDADVVGNVNGTSGSVEKLGNGNGFGLGEILNLNENEGVSDNDNNNNNNNNNNNNNNNNNNDNGICVKDGIDLNARLNLNEDINLNDACDSDLPPFNNAGSVERRDCIDLNLDVSVEEGVNLDVNSGGEILRREFDLNVGVCEEVKEAQGCADGNGYSEVDGEMGQIREEESDVKHTYMEADGGCGNLNCTSDAIKLEEHHASVENIAEEGLVEEKEGHDDKENVAAIDSLRVSDAVSVMECDYVSSEAAVAVVNQYQDDPGSPRKQGIRQRKRRKVSDNLNSTPDTALRRSSRRASARKEVSSAVSGKGTDDPLSSLETSVTEEKTPMPGNEKYEQFNVPIPKLKLPPSSQNLNLDGIPVIEFFSVYACLRSFSTLLFLSPFELEDLVAALKSEIPSVLFDSIHVSILQTLRKHLEFLSSEGSQSASICLRNLNWDFLDLVTWPMFMAEYLLIHSSQFKTSFDANHSMFRTNYYKQPVTLKLEILQYLCDDMIEADTIRSELNRRSLVTESGMGFDQNIYFDTCKKKRAVTDLSGGSCLTEEIADDTTDLNSDECCLCKMDGNLICCDGCPAAFHSRCVGLASDNLPEGDWYCPECAIGTHRASRKSRRSLRGADLLGTDPHGCLYFDSCGYLLVSNSSDAGSLFNYYHRNDIHVVIEVLKSMDTSYRDLLLAIYKHWDIPAALNAGASNLAVFNQSSCKNMQMTAEYDAMPTSVAPFTSSEEFIDKNLVDDQKKLEKNSTIDCCSHDGQDFPKVGNQLDSTIESPCIASEGSADTAQVSTTPYTGNKDSSQAPCGTDYINYYSFARVASLVAQELLICKSQEKINKNIVMTEEEIISDQAKSIMKKSTDFCWPSIQNLNAAAQKEKCGWCFSCKVANDDRDCLYISMVKPLSEVSKSASAGLHPMNIQNGHLREIICNIFSLEARLRGLLLGPWLNLHQTDHWHNNLLKSSDLLPVKRLLLLLESNLSDRALSADWLKHVDSVVTMGSASHIVVSSSRASSRQGIGRKRARQSDIESSSSSKTTGGLAMYWWRGGRLSRKLFNCKVLPRSFVTKAARQAGFTKIPGILYPENSDFAKRSRCVAWRAAVEMSTSVEQLALQVRELYSNIRWHDIENNHPLYVLDKESKKSVRLFKKAIVRRKCMDGQSAKYLIDFGKRRTLPDIIIKHGSLLEQPSSERKKYWLNESYVPLHLLKNFEEKRIVRQSNDKKNRKILEIGIVKRDPQQRGFSYLFARMERSDCHQCGHCKKDVPIREAVSCLHCKEYFHKRHVRKSGGTRATECTYSCHRCQGGLHVKANTNRNKVGSKRQKIQSPNCKSTPLVCKSVNLKGNKKAASKVRQVVSRNNKKTPSIVPLRRSTRKAKSLYLRSQIIAGRKKGTQGKKNVGRKKGKQSKSKKVTSQRPKETTGQPKKFPVATSHKKRIQPSNSYWLNGLRFSRKPNDDRVMLFKEKKHIISDVLTGSFDCPKCRLCHGDGSTSNYIACEICGDWFHGDAFGLTVENAEQLIGFRCHVCRGRDAPICPHAKINALSNTEPNAAIECAEE 1655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02427 1655 CDD PHD1_AIRE 666 708 - -
Trre7g02427 1655 PANTHER PHD FINGER FAMILY PROTEIN 2 1631 - -
Trre7g02427 1655 MobiDBLite consensus disorder prediction 66 120 - -
Trre7g02427 1655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 726 IPR013083 -
Trre7g02427 1655 ProSiteProfiles DDT domain profile. 469 529 IPR018501 -
Trre7g02427 1655 SMART testlast3 469 529 IPR018501 -
Trre7g02427 1655 MobiDBLite consensus disorder prediction 147 172 - -
Trre7g02427 1655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1573 1632 IPR013083 -
Trre7g02427 1655 MobiDBLite consensus disorder prediction 367 444 - -
Trre7g02427 1655 ProSitePatterns Zinc finger PHD-type signature. 667 708 IPR019786 -
Trre7g02427 1655 MobiDBLite consensus disorder prediction 420 438 - -
Trre7g02427 1655 ProSiteProfiles Zinc finger PHD-type profile. 664 711 IPR019787 -
Trre7g02427 1655 MobiDBLite consensus disorder prediction 1492 1509 - -
Trre7g02427 1655 MobiDBLite consensus disorder prediction 1116 1136 - -
Trre7g02427 1655 Pfam DDT domain 474 525 IPR018501 -
Trre7g02427 1655 MobiDBLite consensus disorder prediction 1445 1531 - -
Trre7g02427 1655 SUPERFAMILY FYVE/PHD zinc finger 661 718 IPR011011 -
Trre7g02427 1655 SMART PHD_3 1355 1402 IPR001965 -
Trre7g02427 1655 SMART PHD_3 666 709 IPR001965 -
Trre7g02427 1655 SMART PHD_3 1579 1626 IPR001965 -
Trre7g02427 1655 Pfam PHD-finger 667 709 IPR019787 -
Trre7g02427 1655 SUPERFAMILY FYVE/PHD zinc finger 1576 1628 IPR011011 -
Trre7g02427 1655 MobiDBLite consensus disorder prediction 1450 1465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02427 Trre-Chr7 19876106 19886722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02427 1 1649 PHD Transcription Factor Family AT5G12400 39.743 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre7g02427 DDT 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02427 - - mtr:11438137 2381.67