Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02361 ATGGGAACGCGACCGCAGCAATCGTGTGTAGATGAAGAGGATGAGGAATTGATGGGTTGTGGAACTACGATTTCGGGTCAATCAGGCTCGACGAGTAGGAGTGCCGGGTTACCTTCTAGTCGGAGTGAGCAGACGACGGGAACAGCTGCCGGTAATAATGCTGCTCTCAAATTGAATCATCTTGATATACAGGATGATGATGCTGCTTCACAGGGAGTGGTTGCTAGCAAGAGGAAGAAGAGAGGCCAACGGGCTGTTGGGGGTGATAAGAATGGAAGAGGGCTCCGGCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAAAGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAAGCAATGGTGTTATGTCCCCTGATCAGCAACAATATGATGAGAAAAACATCCGCCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCTATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCAGAATGATATTGAAGAACTAAAGAAAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAAGCAGCGTATCTGCAGGAGCTTGAGGAGCAATTTCTGTTTGCTAACTGCTTCTATTATTGCATCAAGTTTGTAGGTCTTCAGAACCTTATTCAACGAAATGAACAATTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTCTGGTCCAGACCCGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAATAGTTCTCCTTTTGAGCTGCATGACGACAATTATGTTCTGAAGGCAATGAGTTTTGGTGAGAGTGAGAGACCACAGAGTGACAATGTTACACACAATATTACGGATGGAAGGGAAGGTTCTAGCATGTCAGGCATGTATCAGTCACAGGTTCCTTCTTCAGTTTCAAACATGTCAGTTAGGCCTCCCACATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGCATTGA 1071 0.4379 MGTRPQQSCVDEEDEELMGCGTTISGQSGSTSRSAGLPSSRSEQTTGTAAGNNAALKLNHLDIQDDDAASQGVVASKRKKRGQRAVGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNGVMSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQNDIEELKKERLGLRNRIERKAAYLQELEEQFLFANCFYYCIKFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMSFGESERPQSDNVTHNITDGREGSSMSGMYQSQVPSSVSNMSVRPPTSPPLPGILKARVKQEH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02361 356 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Trre7g02361 356 MobiDBLite consensus disorder prediction 21 47 - -
Trre7g02361 356 MobiDBLite consensus disorder prediction 1 47 - -
Trre7g02361 356 Gene3D Transcription factor DP 179 326 IPR038168 -
Trre7g02361 356 FunFam Transcription factor-like protein DPB 179 317 - -
Trre7g02361 356 MobiDBLite consensus disorder prediction 299 337 - -
Trre7g02361 356 PIRSF Txn_factor_DP 4 356 IPR015648 GO:0005667|GO:0051726
Trre7g02361 356 SUPERFAMILY E2F-DP heterodimerization region 180 305 IPR037241 -
Trre7g02361 356 MobiDBLite consensus disorder prediction 299 356 - -
Trre7g02361 356 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Trre7g02361 356 Gene3D - 85 178 IPR036388 -
Trre7g02361 356 SMART DP_2 180 354 IPR014889 -
Trre7g02361 356 FunFam Transcription factor-like protein DPB 85 178 - -
Trre7g02361 356 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Trre7g02361 356 MobiDBLite consensus disorder prediction 69 93 - -
Trre7g02361 356 PANTHER TRANSCRIPTION FACTOR DP 23 337 IPR015648 GO:0005667|GO:0051726
Trre7g02361 356 Coils Coil 189 209 - -
Trre7g02361 356 CDD DP_DD 178 293 IPR014889 -
Trre7g02361 356 Pfam Transcription factor DP 181 301 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02361 Trre-Chr7 19177313 19180929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02361 80 293 E2F-DP Transcription Factor Family AT5G02470 51.389 1.47e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre7g02361 DP 6.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02361 K04683 - qsu:112000390 526.168