Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02353 ATGCATTACATTTTCAGCATGTTATCATTTCTTCTTCTTGTAGAAAATCTCAGCACAATACATTGTCATACAAAGGGAATTCGACAAAAACATTCTTCAGGAAACAGTTTATCAACTAACAATACAACAAGAACAGAGTTAGCAGAACAACAATTCATGAAATGGGTGAGTTTTGTTGGTGGTCTTAAACACTCAGTTTTCAAGACTGCAAAAAATAAGCTCTTTGCTTCTTATACTTTGCACGTTGATAAGAATCCTTCTTTAGGAGATTTTGCAACAATTCAAGAAGCCATTGATTCTCTTCCTTCTATAAATCTTGTTAGAGTTGTCATCAAGGTTCATGCAGGTGTTTACGCGGAGAAAGTTAACATTCCTCCATTAAAATCCTTCATAACCATAGAAGGAGATGGAGCAGATACAACAATTGTTCAATGGGGTGACACTGCTCAAACACCAGGTCCAAGAGGGAATCCAATGGGAACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAAAACATCACATTCCAAAACACTTTTCCTGTTCCTGCACCTGGAGCAATTGGAAAACAAGCAGTGGCATTTAGAATTTCAGCAGACACAGCATCATTCTTAGGTTGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATATTGGTAGACATTACTATAAAGATTGTTACATTGAAGGTTCTGTTGATTTCATCTTTGGCAATGCTCTCTCCTTATTTGAGGGATGTCACGTGCATGCAATAGCTAGAAATACAGGTGCATTAACAGCACAAGGAAGGAGCAGTATGTTACAAGACACAGGTTTCTCATTTGTGAACTGTAAAGTGACAGGTTCAGGGGCACTATACCTTGGAAGAGCTTGGGGTCCTTTTTCACGAGTTATCTTTGCTTATACATATATGGACAATATCATCATTCCTAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGGGCTGGAGCAAACTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGATGAGGAAGCTAAACCTTTTCTTTCACTTACTTTTATTGATGGGACTGAATGGATCAATTTTTAG 1137 0.3773 MHYIFSMLSFLLLVENLSTIHCHTKGIRQKHSSGNSLSTNNTTRTELAEQQFMKWVSFVGGLKHSVFKTAKNKLFASYTLHVDKNPSLGDFATIQEAIDSLPSINLVRVVIKVHAGVYAEKVNIPPLKSFITIEGDGADTTIVQWGDTAQTPGPRGNPMGTYGSATFAVNSPYFIAKNITFQNTFPVPAPGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARNTGALTAQGRSSMLQDTGFSFVNCKVTGSGALYLGRAWGPFSRVIFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGANFAGRVSWSRELTDEEAKPFLSLTFIDGTEWINF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02353 378 Pfam Pectinesterase 89 372 IPR000070 GO:0030599|GO:0042545
Trre7g02353 378 Gene3D - 75 378 IPR012334 -
Trre7g02353 378 ProSitePatterns Pectinesterase signature 2. 235 244 IPR033131 -
Trre7g02353 378 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 377 - -
Trre7g02353 378 SUPERFAMILY Pectin lyase-like 76 377 IPR011050 -
Trre7g02353 378 FunFam Pectinesterase 76 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02353 Trre-Chr7 19112007 19116076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02353 1 376 Carbohydrate Esterase AT5G47500 41.910 1.69e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02353 K01051 - gmx:100793314 658.677