Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02352 ATGTCAAACATGCATTACATTTTCAGCATGTTATCATTTCTTCTTCTTGTAGAAAATCTCAGCACAATACATTGTCATACAAAGGGAATTCGACAAAAACATTCTTCAGGAAACAGTTTATCAACTAACAATACAACAAGAACAGAGTTAGCAGAACAACAATTCATGAAATGGGTGAGTTTTGTTGGTGGTCTTAAACACTCAGTTTTCAAGACTGCAAAAAATAAGCTCTTTGCTTCTTATACTTTGCACGTTGATAAGAATCCTTCTTTAGGAGATTTTGCAACAATTCAAGAAGCCATTGATTCTCTTCCTTCTATAAATCTTGTTAGAGTTGTCATCAAGGTTCATGCAGGTGTTTACGCGGAGAAAGTTAACATTCCTCCATTAAAATCCTTCATAACCATAGAAGGAGATGGAGCAGATACAACAATTGTTCAATGGGGTGACACTGCTCAAACACCAGGTCCAAGAGGGAATCCAATGGGAACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAAAACATCACATTCCAAAACACTTTTCCTGTTCCTGCACCTGGAGCAATTGGAAAACAAGCAGTGGCATTTAGAATTTCAGCAGACACAGCATCATTCTTAGGTTGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATATTGGTAGACATTACTATAAAGATTGTTACATTGAAGGTTCTGTTGATTTCATCTTTGGCAATGCTCTCTCCTTATTTGAGGGATGTCACGTGCATGCAATAGCTAGAAATACAGGTGCATTAACAGCACAAGGAAGGAGCAGTATGTTACAAGACACAGGTTTCTCATTTGTGAACTGTAAAGTGACAGGTTCAGGGGCACTATACCTTGGAAGAGCTTGGGGTCCTTTTTCACGAGTTATCTTTGCTTATACATATATGGACAATATCATCATTCCTAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGGGCTGGAGCAAACTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGATGAGGAAGCTAAACCTTTTCTTTCACTTACTTTTATTGATGGGACTGAATGGATCAATTTTTAG 1146 0.377 MSNMHYIFSMLSFLLLVENLSTIHCHTKGIRQKHSSGNSLSTNNTTRTELAEQQFMKWVSFVGGLKHSVFKTAKNKLFASYTLHVDKNPSLGDFATIQEAIDSLPSINLVRVVIKVHAGVYAEKVNIPPLKSFITIEGDGADTTIVQWGDTAQTPGPRGNPMGTYGSATFAVNSPYFIAKNITFQNTFPVPAPGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARNTGALTAQGRSSMLQDTGFSFVNCKVTGSGALYLGRAWGPFSRVIFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGANFAGRVSWSRELTDEEAKPFLSLTFIDGTEWINF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02352 381 FunFam Pectinesterase 79 381 - -
Trre7g02352 381 SUPERFAMILY Pectin lyase-like 79 380 IPR011050 -
Trre7g02352 381 Gene3D - 78 381 IPR012334 -
Trre7g02352 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 380 - -
Trre7g02352 381 Pfam Pectinesterase 92 375 IPR000070 GO:0030599|GO:0042545
Trre7g02352 381 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02352 Trre-Chr7 19111998 19116076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02352 2 379 Carbohydrate Esterase AT5G47500 41.689 1.51e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02352 K01051 - gmx:100793314 664.455