Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02338 ATGATGGGGAGAGCACCATGTTGTGATGAAAGTGGTTTGAAGAAAGGACCATGGACACCAGAAGAGGATAGAATATTGGTGGATCATATTGAGAAACATGGCCATGGAAGTTGGAGAGCACTTCCAAAGTTAGCAGGATTGAATAGGTGTGGCAAAAGTTGCAGATTAAGGTGGACTAATTATTTAAGACCTGATATCAAAAGAGGAAAATTCACTGAGGAAGAAGAGAAAACCATCATCAATTTACATGCTGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGTCATCTACCAGGGAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTAAAGAAAAAGCTTCTTCAAATGGGATTAGATCCAGTAACTCATCGTCCAAGAATTGATCATCTCAATCTTATGACAAATCTTCAACAGTTTCTTGCTGCAAATGTTCTAAATAATTTTTCAAACACTTGGGACATTACTACTACTAATGCTCTAAAACTTCAATCAGATGCAGCCAAATTTCAATTACTTCAAAACATGCTCCAAATTCAAGTCCTTAATGCTAACAATACTCTTCCTATAAATCCATTTGCACAATCATCATCTTCATCACATCAAGAAAATTTTCTAAATGAAGTTTTAGGATTGAATAATAATAATCAGTCCAATTTTCTTTCTCAAAATTATCATGGAAATTTTCAAGGCTTTGAAGAAGTGCCTCAGATGCAGAATGTTCAAAATCAGTGTATGAATAATGGTGGTAGCAGCAATAGTAGTAGTTGCTTGATTCAAAAGGTTGATGAAGTATTTGATGCTACAAATTCTTCTTTAAATTCGCTTCCGAATTTAGTTTCGGTTTCGCCAGAATGTTCTGCTGTGAAAGGAATGATGGAAAACAAGGTAAACCAAAATGAGTGTTCTAATCCTTCTTCAACTTCAACAACCTTTGAAATGTTGGAAGATTTCATGTATGAAGATGTAAGCATAGATGCTTGTTGGAAAGATCTCTTAGAGTAA 1014 0.3491 MMGRAPCCDESGLKKGPWTPEEDRILVDHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEKTIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRIDHLNLMTNLQQFLAANVLNNFSNTWDITTTNALKLQSDAAKFQLLQNMLQIQVLNANNTLPINPFAQSSSSSHQENFLNEVLGLNNNNQSNFLSQNYHGNFQGFEEVPQMQNVQNQCMNNGGSSNSSSCLIQKVDEVFDATNSSLNSLPNLVSVSPECSAVKGMMENKVNQNECSNPSSTSTTFEMLEDFMYEDVSIDACWKDLLE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02338 337 Gene3D - 70 117 - -
Trre7g02338 337 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre7g02338 337 FunFam Transcription factor MYB39 70 131 - -
Trre7g02338 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre7g02338 337 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre7g02338 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 257 - -
Trre7g02338 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre7g02338 337 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre7g02338 337 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Trre7g02338 337 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre7g02338 337 FunFam MYB-related transcription factor 14 67 - -
Trre7g02338 337 Gene3D - 12 68 - -
Trre7g02338 337 CDD SANT 70 113 IPR001005 -
Trre7g02338 337 CDD SANT 17 62 IPR001005 -
Trre7g02338 337 SMART sant 14 64 IPR001005 -
Trre7g02338 337 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02338 Trre-Chr7 18964562 18966314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02338 2 337 MYB Transcription Factor Family AT5G16770 52.011 1.14e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre7g02338 Myb_DNA-binding 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02338 K09422 - gmx:547488 407.142