Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02325 ATGAGTAGAGATATTTGTAGAAATTTCCAGAGAGGCAGCTGTAAATATGGAGATAGGTGTAGATTTCTTCATCAACAACAGCAAAAATATAATAATGGAGGGTTTGGAGTACAGCAAAATACTAACCCTTTTGGATTTGGGTCTGCCTCTGCTTCTGCCCCTAACAACCACCAAAAGACTAACCCTTTTGGTTTTGGAACTCAAAATACCTCCCACTCAAATGCGCCACCTCGTTCCGACTCCAAACCTAACCAATTTCAGCCTTTTGAAAACAAATGGAGTCGATCTTCATCCAAACCACAAAATGGCACTTCACGTCAGTCAGATAACAATTCCCAAGGAGTGAATCATAAATGCACAGATCCTGAGGTTTGCAAGCGCCAGATGGTAGAAGATTTTCAGCAAGAGAAACCACTTTGGATACTTACATGCTATGGTCATTGCAAAGGCGCTCCTTGTGATATTCTTGGAGATATTAGCTATGAAGAATTACGGGCAGCGGCTTATGAGGATGCCAGGAATGGAATGAGTTTGCCATCAATTGTTGAGAAAGAGAGAAACATAGTAAAATCCAAGATGGTTGAGTTTGACAAACTACTTTCTGAACCCTACAAAATGCCTTTGAATTCTTCTCTTGACATTCAAAACTACCAATCCAATGGAGCCAATGCAAATACATTTTCACCAGCCACTCAAAACTACCAATCTAATGGAGCCAATGCAAATGCATTTTCACCAGCCACTCAAAACAATGGTCCTTTATCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCACTGAACACTGGTTTTGAAAGGCCCTCTGCACCACAAATGACCACTTCAGCGCAGCCTAACTCCTTTGGAAGTGGAGGAAACTTTTTTGGATCCAACACACAACATCTTTTCGGCAGTGGAATCTCAGGTGCTCAAAGCAACCCCTTTTCTACACCAGCGGAGTTTACAATGTTTCCAGGTTTAACTTCACAGTTCCAACAACAATCCACTGTGTTCAATAACACTAGCTCCACTACAATGCTTCCGACAACATCAGATGTTCAGCTAAACACGTCCCAAGTGGAGAATGCGTCTGTAGATGAGAGTATCTGGTTAAAGGAGAAATGGATTCCTGGAGAGATTCCAGAAGTAGCTCCTCCAGATAGATTTATTCAAGATGTGAAATAG 1182 0.4179 MSRDICRNFQRGSCKYGDRCRFLHQQQQKYNNGGFGVQQNTNPFGFGSASASAPNNHQKTNPFGFGTQNTSHSNAPPRSDSKPNQFQPFENKWSRSSSKPQNGTSRQSDNNSQGVNHKCTDPEVCKRQMVEDFQQEKPLWILTCYGHCKGAPCDILGDISYEELRAAAYEDARNGMSLPSIVEKERNIVKSKMVEFDKLLSEPYKMPLNSSLDIQNYQSNGANANTFSPATQNYQSNGANANAFSPATQNNGPLSVSSFSQLGASLNTGFERPSAPQMTTSAQPNSFGSGGNFFGSNTQHLFGSGISGAQSNPFSTPAEFTMFPGLTSQFQQQSTVFNNTSSTTMLPTTSDVQLNTSQVENASVDESIWLKEKWIPGEIPEVAPPDRFIQDVK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02325 393 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Trre7g02325 393 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Trre7g02325 393 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 5 389 - -
Trre7g02325 393 Pfam CCCH-type zinc finger 5 24 IPR041367 -
Trre7g02325 393 Gene3D - 1 76 - -
Trre7g02325 393 MobiDBLite consensus disorder prediction 31 117 - -
Trre7g02325 393 SMART c3hfinal6 1 26 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02325 Trre-Chr7 18847209 18853019 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre7g02325 zf-CCCH 9.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02325 K14321 - gmx:100814339 471.47