Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02305 ATGGATCAAGTTAGAGGAAGTGATAAACCTTCTAGCTCTATACCCAAAGTTGAAAGAAGACTGGTCGAGAAAAATAGAAGAAATCAGATGAAGATCCTTTACTCCAAACTCAACTCTCTTCTCCCTAATTCTAATCCCAAGGAATTGGCGTTACCGTTACCGGACCAAGTAGATGAGGCAATAAACTACATAAAGAGGTTAGAGGCAAATGTGAAGATCGCTAAGGAGAAGAAAGAGATGTTATTAGAAGGAAAGAAAAAAAGATCGCGCAAATATTGTTCGGATCTACCAAAATTGTCACGTTTTGAAATTTACGAAAATGGCTCTTCTCTACAAATCATTCTCACGTGTGGATTAGATGACCGGTTCATTTTCTATGAAATCATTCGCGTGTTGCATGAAGAGAATATAGACGTCAGAAGTGTCAATTCTTCTACTGTTGGAGATAATTCACTCCTTCATGTTGTGCATGCTGAGATTCCTCAATCTTGTGTTCAATTTGGAGCAACAAAAGTGAGTGAGAGATTAAAAAGATTTGTGAATGGATCCTCCAGTGATGTAGAAATGCAGCCTGATGATTTGTGGGATTTTGAAATTGAAACTGATTTGTGGGGTTTAATTTCTAGCTAG 630 0.3762 MDQVRGSDKPSSSIPKVERRLVEKNRRNQMKILYSKLNSLLPNSNPKELALPLPDQVDEAINYIKRLEANVKIAKEKKEMLLEGKKKRSRKYCSDLPKLSRFEIYENGSSLQIILTCGLDDRFIFYEIIRVLHEENIDVRSVNSSTVGDNSLLHVVHAEIPQSCVQFGATKVSERLKRFVNGSSSDVEMQPDDLWDFEIETDLWGLISS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02305 209 FunFam Transcription factor bHLH162 6 94 - -
Trre7g02305 209 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 180 - -
Trre7g02305 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 83 IPR036638 GO:0046983
Trre7g02305 209 Coils Coil 57 84 - -
Trre7g02305 209 Gene3D - 6 98 IPR036638 GO:0046983
Trre7g02305 209 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Trre7g02305 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 67 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02305 Trre-Chr7 18638244 18639130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02305 17 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.223 4.50e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g02305 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02305 - - tpra:123913718 366.696