Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02295 ATGTTGCAGTTCAATGATGATACCACATACAGTGAGGTGGAAGACGATGACAGCATCCTTCTCCATGTTTTTGAGTTTGTTAAATATGCACATTTGGAATCTCAGATAGACAAACATGTGTTGACAGATATAATTGGAGTTATAGTTGATGTCAATCCAATTGAGGAAAGGAAAGTTCATGGTGGTAAAGTGGATATGCTGTCAATTCGGCTGAAAGATATACGTGGGAACACAATCAACGTCACATTGTGGGGTCGGCATGCTACAATTTTTGAGGACACCCTGAAGGGGAATTTGTGTGACGCTCCTGACCCAAATGTTGCAGTCATCACATCCACTACATCTAAGAGATATCAGGGTGATTTGTCTCTCAACTCATCAAGCTCAACAAAGATTTATGTCAAAATAGATATACCAGAGGCAGCTGAACTCATTCAATCATTCAATACCAATGTTCTGCATTCATCTGCAAATGCAAGTCTCACAAATTCTGCTATCTTGGACAAGACAAGGACTATCTCTGAAATTTTGAGCTCCGCAGTATCAGGGAGTAATAAGGCTGCTGTGTTTAACTGTGTTGCAACAGTGGACGAGATTTTTGATAAAAATGGATGGTATTTTGTCTCATGTCCTAAGTGCAAAAAAAGTGCTTCTACTGCAGAAACACACTTCAACTGTGAATTCTGTCATGAAAGTGTGGATTACCCCATTACAAGGTATCGCTTGGAGCTTGGTGTCAAGGACTCTACAGGTTCGACTATATTTGTATTGTTTGATGAGGTTGCTGAGCAAGTGGCACAGATGAAATTAGTTGATCTGACCGCAACTTTAGAGAATACAAAGTTTCACAGTGAGTATAGGATTGTGAAGCCTAAGGTGAAGGTAGAGAAAGATGACAAGCTTGACAGCGAAAGTAATACCTCAAGTAGTTGTCCAAAAATAATGACGCCAAGGTTACCACAAAAGAGAAGAAGGTTAAGGTTACAATATGAAGAGGAGTCTGACAATATGGAGCAGAAAGATGTTGCATCAGATTTGGAAGAGTGA 1047 0.3983 MLQFNDDTTYSEVEDDDSILLHVFEFVKYAHLESQIDKHVLTDIIGVIVDVNPIEERKVHGGKVDMLSIRLKDIRGNTINVTLWGRHATIFEDTLKGNLCDAPDPNVAVITSTTSKRYQGDLSLNSSSSTKIYVKIDIPEAAELIQSFNTNVLHSSANASLTNSAILDKTRTISEILSSAVSGSNKAAVFNCVATVDEIFDKNGWYFVSCPKCKKSASTAETHFNCEFCHESVDYPITRYRLELGVKDSTGSTIFVLFDEVAEQVAQMKLVDLTATLENTKFHSEYRIVKPKVKVEKDDKLDSESNTSSSCPKIMTPRLPQKRRRLRLQYEEESDNMEQKDVASDLEE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02295 348 MobiDBLite consensus disorder prediction 297 348 - -
Trre7g02295 348 CDD RPA1_DBD_C 173 279 IPR047192 -
Trre7g02295 348 Pfam Replication protein A OB domain 35 133 IPR031657 -
Trre7g02295 348 Pfam Replication factor-A C terminal domain 190 281 IPR013955 -
Trre7g02295 348 MobiDBLite consensus disorder prediction 324 348 - -
Trre7g02295 348 Gene3D - 18 156 IPR012340 -
Trre7g02295 348 SUPERFAMILY Nucleic acid-binding proteins 170 280 IPR012340 -
Trre7g02295 348 SUPERFAMILY Nucleic acid-binding proteins 24 153 IPR012340 -
Trre7g02295 348 Gene3D - 157 337 IPR012340 -
Trre7g02295 348 PANTHER OS03G0429900 PROTEIN 67 315 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre7g02295 348 CDD RPA1_DBD_B_like 43 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02295 Trre-Chr7 18434504 18436520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02295 2 273 Core DNA Replication Machinery Family AT5G45400 24.028 2.67e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02295 - - mtr:120580096 278.87