Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02294 ATGTTGCAGTTCAATGATGATACCACATACAGTGAGGTGGAAGACGATGACAGCATCCTTCTCCATGTTTTTGAGTTTGTTAAATATGCACATTTGGAATCTCAGATAGACAAACATGTGTTGACAGATATAATTGGAGTTATAGTTGATGTCAATCCAATTGAGGAAAGGAAAGTTCATGGTGGTAAAGTGGATATGCTGTCAATTCGGCTGAAAGATATACGTGGGAACACAATCAACGTCACATTGTGGGGTCGGCATGCTACAATTTTTGAGGACACCCTGAAGGGGAATTTGTGTGACGCTCCTGACCCAAATGTTGCAGTCATCACATCCACTACATCTAAGAGATATCAGGGTGATTTGTCTCTCAACTCATCAAGCTCAACAAAGATTTATGTCAAAATAGATATACCAGAGGCAGCTGAACTCATTCAATCATTCAATACCAATGTTCTGCATTCATCTGCAAATGCAAGTCTCACAAATTCTGCTATCTTGGACAAGACAAGGACTATCTCTGAAATTTTGAGCTCCGCAGTATCAGGGAGTAATAAGGCTGCTGTGTTTAACTGTGTTGCAACAGTGGACGAGATTTTTGATAAAAATGGATGGTATTTTGTCTCATGTCCTAAGTGCAAAAAAAGTGCTTCTACTGCAGAAACACACTTCAACTGTGAATTCTGTCATGAAAGTGTGGATTACCCCATTACAAGGTATCGCTTGGAGCTTGGTGTCAAGGACTCTACAGGTTCGACTATATTTGTATTGTTTGATGAGGTTGCTGAGCAAGTGGCACAGATGAAATTAGTTGATCTGACCGCAACTTTAGAGAATGAAACTGAGAATGGTTCATCAATACCACATCAACTGAAAAGGATCATTGGGACTATACATATATTTCAAATTAAGATGAAATCTTACTTTGAGGGTCGTGGAAGACAAAGTTTCACAGTAGAGAAAGATGACAAGCTTGACAGCGAAAGTAATACCTCAAGTAGTTGTCCAAAAATAATGACGCCAAGGTTACCACAAAAGAGAAGAAGGTTAAGGTTACAATATGAAGAGGAGTCTGACAATATGGAGCAGAAAGATGTTGCATCAGATTTGGAAGAGTGA 1119 0.3923 MLQFNDDTTYSEVEDDDSILLHVFEFVKYAHLESQIDKHVLTDIIGVIVDVNPIEERKVHGGKVDMLSIRLKDIRGNTINVTLWGRHATIFEDTLKGNLCDAPDPNVAVITSTTSKRYQGDLSLNSSSSTKIYVKIDIPEAAELIQSFNTNVLHSSANASLTNSAILDKTRTISEILSSAVSGSNKAAVFNCVATVDEIFDKNGWYFVSCPKCKKSASTAETHFNCEFCHESVDYPITRYRLELGVKDSTGSTIFVLFDEVAEQVAQMKLVDLTATLENETENGSSIPHQLKRIIGTIHIFQIKMKSYFEGRGRQSFTVEKDDKLDSESNTSSSCPKIMTPRLPQKRRRLRLQYEEESDNMEQKDVASDLEE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02294 372 Gene3D - 18 156 IPR012340 -
Trre7g02294 372 Gene3D - 157 340 IPR012340 -
Trre7g02294 372 CDD RPA1_DBD_C 173 338 IPR047192 -
Trre7g02294 372 Pfam Replication protein A OB domain 35 133 IPR031657 -
Trre7g02294 372 MobiDBLite consensus disorder prediction 348 372 - -
Trre7g02294 372 Pfam Replication factor-A C terminal domain 190 331 IPR013955 -
Trre7g02294 372 MobiDBLite consensus disorder prediction 320 372 - -
Trre7g02294 372 PANTHER OS03G0429900 PROTEIN 67 359 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre7g02294 372 SUPERFAMILY Nucleic acid-binding proteins 24 153 IPR012340 -
Trre7g02294 372 CDD RPA1_DBD_B_like 43 148 - -
Trre7g02294 372 SUPERFAMILY Nucleic acid-binding proteins 170 321 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02294 Trre-Chr7 18434504 18436520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02294 2 331 Core DNA Replication Machinery Family AT5G45400 24.269 2.50e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02294 - - mtr:120580096 334.339