Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02285 ATGTCGCTTCAGTCTCTGAAAGAAACACTCAGACATTGCACAACCCAACAATCACAACCATCTTCTTCTTCTTCTTCTTCTTCATCTCAATCCATTCTCAGCAATTTCGATACCAATTTCCCAATTTACAGAAAACCCCCAAAAGCCTCTCTTGCCGACCAACTTCGCCTCTTTGACGACCCACCCTTTCAGCCCCACAATTTTCTTTCCCAACAAAACGACTCCAAAACCTCACAAGTTCAACTAGACCTAGAAAAAGAGGAGGAAGAAGATGAAGAGCCAGAGATAAAGAGGGTCAAATTCAGTTCAGCCAAATCTTCTCAGTTTCAATTTGATCATACTGGACCCTTTGAGCCTTTGGTCTTGTCTTCGGATGGAGAACTTCCTTTAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTTAAGTTTCTTTATGATTTGTACAAGAAGAATCATGGGGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTCGTAAAGAAGGAGACTCCGTTCTAACTGAGAAGCGAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAATTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGTGTTTCCATTTATCACGGTGCAAACCGTGATTTGGTATATGATAAACTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACATTCAGGATTTATGGCGACAGTTCCTTGTCAGATATCCACTGGAGTATTGTGATTATTGATGAGGCTCATCGACTTAAGAACTGGAAATCAAAACTCTATAATGCATGTTTAAAAATTAAAACCCTGCGACGATATGGTCTTACTGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAACATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTTCAAATTGCTAATAAGAGAAAACAACACCTTGTTGCGGTTCTTAATAAATATATGTTGAGAAGGACAAAGGAAGAAACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTTTTTTGTGCAATGAGTGATTTACAAAAACGTGTTTACAGGAGAATGATCCAGCTTCCTGATATTCAGTGCCTTATAAATAAGGACCGACCTTGTAGTTGTGGTAGCCCTCTCACTCAAGCTGAATGTTGCAAAAGGACGGTACCAGACGGAGCTATCTGGCCTTACCTTCACAAAGATAACCTGGATGATGGATGTGATTCATGTCCCTTTTGCATTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCTCGAGAAACAAGTTAAAGATGCAAATTTTGCTGCTGCTGTCTATGGCCAAGACATTGACTTAGTTGGTGGGAACATGCAGAATGAGAGTTTCCTAAGTCTAAGTGATACAAAACATTGTGGCAAAATGCGAGCACTTGAAAAGCTATTATTGTCATGGTTTTCAAATGGAGACAAAGTTCTCTTGTTTAGCTATTCTGTAAGGATGTTGGACATACTAGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGATCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCGAGCAAACAAGTGTTCCTGATATCAACACGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCGAACCGTGTAGTAATATTTGATCCCAACTGGAATCCTTCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAATTTATTCTCGCCAGGTGTACAAGCAGCAGTTATCAAACATTGCTGTCTCTGGAAAGATGGAAAAAAGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTAAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAATTATTTACCAGTGAGATCATTGAAATGCATGAGACGAGTAAAACAGACGACGGGCTTAAAACAGAACAACAGAAAAAAATAAATATTTCAGAAGAAACAAGTTTATCAGACACAGAGCCTGAAACAAGTAAACCAGATATTGAATTTGAAGACCTCGGCATAGTTTACGCTCATCGCAATGAAGACATTGTCAACTCTCGACCAGCGATTCAAGGGCAGTTTTCTACCAGCAGCACCCCTTCAAGTGATGACCTATGCAGGCCAAGCATCTCTGTGGTCCATCAAAAGGAAAAACCAGATTGTGTACCTAAAAATGTGAAAGTTACTTTGATTGATGAAAGAAAGAGAGCACAGTTTAGCCTTCTTGCAGAGTCTATGGGCATGGGAGAGCTTGCATTCAGCAAATGGTTACTATCAGCCACTCCAGAAGAGAGAAAAAAAGTGCTTATAGATTATAAGAAGAAAAAGAAAAAGACTAAAGGTTGA 2628 0.4033 MSLQSLKETLRHCTTQQSQPSSSSSSSSSQSILSNFDTNFPIYRKPPKASLADQLRLFDDPPFQPHNFLSQQNDSKTSQVQLDLEKEEEEDEEPEIKRVKFSSAKSSQFQFDHTGPFEPLVLSSDGELPLVQVPASINCRLLEHQRVGVKFLYDLYKKNHGGILGDDMGLGKTIQTIAFLAAIFRKEGDSVLTEKRVEKRDPVLIICPSSIIQNWESEFSKWSNFSVSIYHGANRDLVYDKLEANGVEVLITSFDTFRIYGDSSLSDIHWSIVIIDEAHRLKNWKSKLYNACLKIKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMIQLPDIQCLINKDRPCSCGSPLTQAECCKRTVPDGAIWPYLHKDNLDDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDLEKQVKDANFAAAVYGQDIDLVGGNMQNESFLSLSDTKHCGKMRALEKLLLSWFSNGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRFGQKRHVVVFRLLSAGSLEELIYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIIEMHETSKTDDGLKTEQQKKINISEETSLSDTEPETSKPDIEFEDLGIVYAHRNEDIVNSRPAIQGQFSTSSTPSSDDLCRPSISVVHQKEKPDCVPKNVKVTLIDERKRAQFSLLAESMGMGELAFSKWLLSATPEERKKVLIDYKKKKKKTKG 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02285 875 Pfam Helicase conserved C-terminal domain 532 644 IPR001650 -
Trre7g02285 875 MobiDBLite consensus disorder prediction 727 757 - -
Trre7g02285 875 MobiDBLite consensus disorder prediction 65 79 - -
Trre7g02285 875 PANTHER SNF2/RAD54 FAMILY MEMBER 19 802 - -
Trre7g02285 875 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 271 280 IPR002464 -
Trre7g02285 875 Gene3D - 387 753 IPR027417 -
Trre7g02285 875 MobiDBLite consensus disorder prediction 727 741 - -
Trre7g02285 875 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 325 IPR014001 -
Trre7g02285 875 SMART ultradead3 137 333 IPR014001 -
Trre7g02285 875 MobiDBLite consensus disorder prediction 1 33 - -
Trre7g02285 875 Pfam SNF2-related domain 157 415 IPR000330 GO:0005524|GO:0140658
Trre7g02285 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 375 IPR027417 -
Trre7g02285 875 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 122 374 - -
Trre7g02285 875 SMART helicmild6 561 644 IPR001650 -
Trre7g02285 875 CDD SF2_C_SNF 526 655 - -
Trre7g02285 875 MobiDBLite consensus disorder prediction 62 94 - -
Trre7g02285 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 699 IPR027417 -
Trre7g02285 875 Gene3D - 120 374 IPR038718 -
Trre7g02285 875 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 688 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02285 Trre-Chr7 18325681 18330705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02285 160 685 RAD5 or RAD16-like Gene Family AT5G05130 25.487 4.12e-39 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre7g02285 SNF2_N 8.9e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02285 K20098 - gmx:100781003 1315.83