Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02284 ATGTCGCTTCAGTCTCTGAAAGAAACACTCAGACATTGCACAACCCAACAATCACAACCATCTTCTTCTTCTTCTTCTTCTTCATCTCAATCCATTCTCAGCAATTTCGATACCAATTTCCCAATTTACAGAAAACCCCCAAAAGCCTCTCTTGCCGACCAACTTCGCCTCTTTGACGACCCACCCTTTCAGCCCCACAATTTTCTTTCCCAACAAAACGACTCCAAAACCTCACAAGTTCAACTAGACCTAGAAAAAGAGGAGGAAGAAGATGAAGAGCCAGAGATAAAGAGGGTCAAATTCAGTTCAGCCAAATCTTCTCAGTTTCAATTTGATCATACTGGACCCTTTGAGCCTTTGGTCTTGTCTTCGGATGGAGAACTTCCTTTAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTTAAGTTTCTTTATGATTTGTACAAGAAGAATCATGGGGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTCGTAAAGAAGGAGACTCCGTTCTAACTGAGAAGCGAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAATTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGTGTTTCCATTTATCACGGTGCAAACCGTGATTTGGTATATGATAAACTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACATTCAGGATTTATGGCGACAGTTCCTTGTCAGATATCCACTGGAGTATTGTGATTATTGATGAGGCTCATCGACTTAAGAACTGGAAATCAAAACTCTATAATGCATGTTTAAAAATTAAAACCCTGCGACGATATGGTCTTACTGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAACATGGTCAGAGGTCAACTGCTCCTGATAGGAGAATGATCCAGCTTCCTGATATTCAGTGCCTTATAAATAAGGACCGACCTTGTAGTTGTGGTAGCCCTCTCACTCAAGCTGAATGTTGCAAAAGGACGGTACCAGACGGAGCTATCTGGCCTTACCTTCACAAAGATAACCTGGATGATGGATGTGATTCATGTCCCTTTTGCATTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCTCGAGAAACAAGTTAAAGATGCAAATTTTGCTGCTGCTGTCTATGGCCAAGACATTGACTTAGTTGGTGGGAACATGCAGAATGAGAGTTTCCTAAGTCTAAGTGATACAAAACATTGTGGCAAAATGCGAGCACTTGAAAAGCTATTATTGTCATGGTTTTCAAATGGAGACAAAGTTCTCTTGTTTAGCTATTCTGTAAGGATGTTGGACATACTAGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGATCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCGAGCAAACAAGTGTTCCTGATATCAACACGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCGAACCGTGTAGTAATATTTGATCCCAACTGGAATCCTTCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAATTTATTCTCGCCAGGTGTACAAGCAGCAGTTATCAAACATTGCTGTCTCTGGAAAGATGGAAAAAAGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTAAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAATTATTTACCAGTGAGATCATTGAAATGCATGAGACGAGTAAAACAGACGACGGGCTTAAAACAGAACAACAGAAAAAAATAAATATTTCAGAAGAAACAAGTTTATCAGACACAGAGCCTGAAACAAGTAAACCAGATATTGAATTTGAAGACCTCGGCATAGTTTACGCTCATCGCAATGAAGACATTGTCAACTCTCGACCAGCGATTCAAGGGCAGTTTTCTACCAGCAGCACCCCTTCAAGTGATGACCTATGCAGGCCAAGCATCTCTGTGGTCCATCAAAAGGAAAAACCAGATTGTGTACCTAAAAATGTGAAAGTTACTTTGATTGATGAAAGAAAGAGAGCACAGTTTAGCCTTCTTGCAGAGTCTATGGGCATGGGAGAGCTTGCATTCAGCAAATGGTTACTATCAGCCACTCCAGAAGAGAGAAAAAAAGTGCTTATAGATTATAAGAAGAAAAAGAAAAAGACTAAAGGTTGA 2466 0.4075 MSLQSLKETLRHCTTQQSQPSSSSSSSSSQSILSNFDTNFPIYRKPPKASLADQLRLFDDPPFQPHNFLSQQNDSKTSQVQLDLEKEEEEDEEPEIKRVKFSSAKSSQFQFDHTGPFEPLVLSSDGELPLVQVPASINCRLLEHQRVGVKFLYDLYKKNHGGILGDDMGLGKTIQTIAFLAAIFRKEGDSVLTEKRVEKRDPVLIICPSSIIQNWESEFSKWSNFSVSIYHGANRDLVYDKLEANGVEVLITSFDTFRIYGDSSLSDIHWSIVIIDEAHRLKNWKSKLYNACLKIKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRRMIQLPDIQCLINKDRPCSCGSPLTQAECCKRTVPDGAIWPYLHKDNLDDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDLEKQVKDANFAAAVYGQDIDLVGGNMQNESFLSLSDTKHCGKMRALEKLLLSWFSNGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRFGQKRHVVVFRLLSAGSLEELIYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIIEMHETSKTDDGLKTEQQKKINISEETSLSDTEPETSKPDIEFEDLGIVYAHRNEDIVNSRPAIQGQFSTSSTPSSDDLCRPSISVVHQKEKPDCVPKNVKVTLIDERKRAQFSLLAESMGMGELAFSKWLLSATPEERKKVLIDYKKKKKKTKG 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02284 821 MobiDBLite consensus disorder prediction 673 687 - -
Trre7g02284 821 Pfam Helicase conserved C-terminal domain 478 590 IPR001650 -
Trre7g02284 821 SMART helicmild6 507 590 IPR001650 -
Trre7g02284 821 MobiDBLite consensus disorder prediction 65 79 - -
Trre7g02284 821 CDD SF2_C_SNF 472 601 - -
Trre7g02284 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 643 IPR027417 -
Trre7g02284 821 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 271 280 IPR002464 -
Trre7g02284 821 MobiDBLite consensus disorder prediction 673 703 - -
Trre7g02284 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 352 IPR027417 -
Trre7g02284 821 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 325 IPR014001 -
Trre7g02284 821 SMART ultradead3 137 333 IPR014001 -
Trre7g02284 821 MobiDBLite consensus disorder prediction 1 33 - -
Trre7g02284 821 PANTHER SNF2/RAD54 FAMILY MEMBER 352 748 - -
Trre7g02284 821 Pfam SNF2-related domain 157 357 IPR000330 GO:0005524|GO:0140658
Trre7g02284 821 MobiDBLite consensus disorder prediction 62 94 - -
Trre7g02284 821 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 122 359 - -
Trre7g02284 821 Gene3D - 407 699 IPR027417 -
Trre7g02284 821 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 481 634 IPR001650 -
Trre7g02284 821 Gene3D - 120 363 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02284 Trre-Chr7 18325681 18330705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02284 161 620 RAD5 or RAD16-like Gene Family AT1G02670 26.012 2.66e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre7g02284 SNF2_N 1.7e-44 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02284 K20098 - cave:132182799 1033.86