Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02276 ATGATGGCCACCGCGCTCCACAATTCCTCCGCTGTCGACGACGACGATCCTCTCTTGCCCTATCTCTGGTCAATCAGAAAAGCCCTAGACAATTCCACTCCCAATCTCACCGAGTTACTCTTAGATTGCATCAACAAATTCAACGACATTCCCCGCTACCGAAACGATTTCAGATTTCTCAAGATCTGGTTCTTATATATGGATGCTAGTGCTGATTTTGACAGTGTTTTCAAGCAATTGCTGGATAGTAATGTATGTGCAAACGATGCTAAACTTTATGTGTACTCTGCAATGTTTTTTGAAGCAAAGGGTAGATTGCGCGATGCGGGCACCATCTATAAGCTCGGCTTTTCCAAAAATGCAGAACCAATTAAGTGGTTGGAGGAGGCATATAACTTATTTCGCAGTAGAATTTTTGAAATATTGAATGCTGATTCAAGCCAGAAGGCTGAATATAAAGAATCTGCTACATTGGAAAATGATGGCATTAATCCATGGGACACCTCTACTCTGAATGACCTTTTGAAGAAGATAAATCCTTTAATTGAAAAATTTGACGGGTATCGTTCGAGCACTAAAGCTTATACAGGAAAAGTGGCCTTATCCACTTTGAAGAATGCATCAAGGAATAAAGTTATAGATATAGGCCGAATGAAGTACCATATCAAGGGTTGTGCTGGACAGGGTGGTTTTGCTCAAGTATTCAAGGCAAATGTCAACGGTGACCCTGATGATGTTGTGGCACTAAAGATACAAAAGCCAGCTTTCCCTTGGGAATTTTACATGTACCGTCAGCTGGATCAGCGCATCTCTGGCAGAGAAAGGTCAAGCTATGGTTTCGCTCATGGAATTCATCTCTATTCTGACTGTAGCATACTCATCTGTGACTATTTAGCTAATGGGACACTTCAGGATGTCATCAACTCATATGTGGTCATAGGAAAATCCATGGAAGAAGTATTGTGCATTTATTACACAACAGAGATGTTGCACATGATTGAAACTCTGCATGATGTTGGCTTGATTCATGGTGATTTCAAGCCTGACAATCTGCTCATACGCTATTCTAGGGGTAACCTCACAGAAGAAGGATTCTTAGATCAAAGCGGTTCTTGGGGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTTCATCTCTTTCCAGATCACACAATATTTAAGGGAGATTGTAGAACTTCTGGTTTCCGATGCATTGAGATGCAGGAGGACAAGCCATGGAAGTTTCAGGTAGATGCGTATGGCCTTTGCTGTGTTGTCCATACGATGCTGCATAATTGCTATATGGATATCGTTAAGAAAGAATCATCTGATGGGGGCTCTGTGTACCTTCCCAGACTACCCTTTAAACGTTACTGGAATGCTGATCTCTGGAAGACTTTCTTCACTAAGATGCTAAATAACTACCCCTGCCATGATGATAAGAAGTTGCTGCAGGAATTGAAGAAGTCCTTCCAGGACTATTTGGTCTCTGATCCTCAACGTATAAAGAAACTTAAGGAGTTACTCGCGAAGCAAAGGGTTTCTCTGTGTAATGCTTAA 1572 0.4186 MMATALHNSSAVDDDDPLLPYLWSIRKALDNSTPNLTELLLDCINKFNDIPRYRNDFRFLKIWFLYMDASADFDSVFKQLLDSNVCANDAKLYVYSAMFFEAKGRLRDAGTIYKLGFSKNAEPIKWLEEAYNLFRSRIFEILNADSSQKAEYKESATLENDGINPWDTSTLNDLLKKINPLIEKFDGYRSSTKAYTGKVALSTLKNASRNKVIDIGRMKYHIKGCAGQGGFAQVFKANVNGDPDDVVALKIQKPAFPWEFYMYRQLDQRISGRERSSYGFAHGIHLYSDCSILICDYLANGTLQDVINSYVVIGKSMEEVLCIYYTTEMLHMIETLHDVGLIHGDFKPDNLLIRYSRGNLTEEGFLDQSGSWGDQGLCLVDWGRGIDLHLFPDHTIFKGDCRTSGFRCIEMQEDKPWKFQVDAYGLCCVVHTMLHNCYMDIVKKESSDGGSVYLPRLPFKRYWNADLWKTFFTKMLNNYPCHDDKKLLQELKKSFQDYLVSDPQRIKKLKELLAKQRVSLCNA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02276 523 SMART mad3_bub1_i 1 117 IPR013212 -
Trre7g02276 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 341 353 IPR008271 GO:0004672|GO:0006468
Trre7g02276 523 Pfam Mad3/BUB1 homology region 1 9 116 IPR013212 -
Trre7g02276 523 Gene3D - 4 156 - -
Trre7g02276 523 Gene3D Transferase(Phosphotransferase) domain 1 218 520 - -
Trre7g02276 523 Pfam Protein kinase domain 221 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g02276 523 ProSiteProfiles Protein kinase domain profile. 220 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g02276 523 SMART serkin_6 220 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g02276 523 ProSiteProfiles BUB1 N-terminal domain profile. 2 158 IPR013212 -
Trre7g02276 523 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 147 518 IPR015661 GO:0007094
Trre7g02276 523 SUPERFAMILY Protein kinase-like (PK-like) 219 447 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02276 Trre-Chr7 18247652 18253074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02276 219 383 CBL-interacting serine-threonine protein kinases AT2G26980 26.901 2.58e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Trre7g02276 Pkinase 2.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02276 K02178 - gmx:100802272 824.698