Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02274 ATGAGTAGTGTACTTTGTGAAGAGCAACAAAAACTTCTCCTTTCCCTAAAAAAATCTCTCAATCTTAGAGACACCAATATGATAGACAACATCCCACCAAGAAAGCTACTCACCCGCCGACCACAATCCACCACCGCCGACATGTTTTCCGACGAGGATCCATATTCCTCCGATCATTTCCGAATGTATGAGTTCAAAATCCGGCGATGCACACGTAGCCGGAGCCACGACTGGACAGATTGCCCTTTCGCTCATCCAGGCGAAAAGGCCCGCCGTCGTGACCCCCTTAGGTATCAATACTCCGGTGAGGTGTGTCTTGATTATCGCCGCGGACACTGCGAACGCGGCGATGCTTGTGAATTTTCACATGGAGTTTTTGAGTGCTGGTTGCACCCTTCAAGGTATAGAACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGAAAAATTTGTTTTTTTGCTCATACACCCCGTCAACTCAGAGTTTTGCTATTGCCACCCCCTCCTTCTCTTACACCTCAAAACAACAAAAATTGTTGTTCTTTTTGTCATTGCTGTTCAAATTCTTCATCTTCTTCATCACCCACTTCGATTTTGTTAAGTGGGCCACATTTTTCTTCTTCAAATTCACCACCTTTATCACCTTTGTCAAATTCAAATTCAAAGGATGTCCATGTTCTTAACGAGCTTATTCGATCTATGGAAAGTTTCAATTTTGGTGATGATATTCTTCATGAGGTTAATTCCCCTGTTTCTGCTTCAAAATTGAATTGGATTAATAATAATAATAATAATATTAGTCCTAATTCTTGTGGAAAATATTATAATTCAAATGGTAGTGAGAACTTTTTGAGAAAAGAACAGAGGATTAAGGTTGTTGAAGATGAAGTTGTTGCTAACCCAGATTTTGGGTGGGTGAATGATTTGCTGATGTAG 936 0.4038 MSSVLCEEQQKLLLSLKKSLNLRDTNMIDNIPPRKLLTRRPQSTTADMFSDEDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRYQYSGEVCLDYRRGHCERGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRVLLLPPPPSLTPQNNKNCCSFCHCCSNSSSSSSPTSILLSGPHFSSSNSPPLSPLSNSNSKDVHVLNELIRSMESFNFGDDILHEVNSPVSASKLNWINNNNNNISPNSCGKYYNSNGSENFLRKEQRIKVVEDEVVANPDFGWVNDLLM 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02274 311 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Trre7g02274 311 SMART c3hfinal6 134 157 IPR000571 GO:0046872
Trre7g02274 311 Gene3D - 97 162 - -
Trre7g02274 311 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Trre7g02274 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 124 IPR000571 GO:0046872
Trre7g02274 311 SUPERFAMILY CCCH zinc finger 98 128 IPR036855 GO:0046872
Trre7g02274 311 PANTHER UNKEMPT FAMILY MEMBER 47 310 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02274 Trre-Chr7 18219886 18220821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02274 51 260 C2H2 Transcription Factor Family AT5G07500 40.566 2.49e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre7g02274 zf-CCCH 5.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02274 K23047 - psat:127100681 441.425