Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02273 ATGGTTATGAAAACAAAGAATGTCGATCTTAAAATTAAAAAGCCTTTGAATAATAACAACAATGCAACAACAACCGAGATTCACTTCAGAGGCGTTAGAAAGAGACCATGGGGACGTTACGCTGCCGAGATTCGTGATCCCGGCAAGAAAAGCCGTGTTTGGTTAGGAACCTTCGACACTGCCGAAGAAGCTGCCAGAGCTTACGATGCCGCCGCTCGTCAGTTCAGAGGACCGAAAGCTAAGACCAATTTTCCTCCACCGTCTGATGTTGTTAAAGAGGATACCCCAAGCCAGAGCAGCACCGTTGAGTCATCCACACCTGAGCGTGAAATCACGCGCCCTCGTGAAGTTGCTTCCGGCTGCGGCGGAGGCGGCGGTGGAGGTGGCGGTGTCATGGATCGGTTTCTGTTTCTTTCGATCCAGCAACAAATGATGCCGTTTACCGGCGCTGGTGTTGGTGTTGGTGCTGTGAATGGAATGGTAACTGCTGTGAACCCGGTTTTCTTTTTTGATCCAGTGGCTCGAGCTGAGTTTATGAACCAAAGGTTTTCTACCCGGTTTGAACCGGGTCCGGTTGAGTTTAATATCGGGTTTGGTGGTGGTGTTCAGAGCGACTCGGATTCGTCTTCTGTTGTTGATTGTCAGCCGAAGAGAGCTCTCAATCTTGATCTTAACTTAGCTCCACCAATGGATGTTTAG 699 0.4921 MVMKTKNVDLKIKKPLNNNNNATTTEIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPPPSDVVKEDTPSQSSTVESSTPEREITRPREVASGCGGGGGGGGGVMDRFLFLSIQQQMMPFTGAGVGVGAVNGMVTAVNPVFFFDPVARAEFMNQRFSTRFEPGPVEFNIGFGGGVQSDSDSSSVVDCQPKRALNLDLNLAPPMDV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02273 232 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Trre7g02273 232 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Trre7g02273 232 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Trre7g02273 232 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 159 - -
Trre7g02273 232 SUPERFAMILY DNA-binding domain 28 85 IPR016177 GO:0003677
Trre7g02273 232 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Trre7g02273 232 MobiDBLite consensus disorder prediction 76 124 - -
Trre7g02273 232 MobiDBLite consensus disorder prediction 92 107 - -
Trre7g02273 232 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Trre7g02273 232 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Trre7g02273 232 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Trre7g02273 232 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02273 Trre-Chr7 18184925 18185623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02273 26 230 AP2-EREBP Transcription Factor Family AT5G44210 45.116 3.86e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g02273 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02273 K09286 - gmx:100801924 214.927