Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02264 ATGCTTGCGGTGTCACCATTGAGGAACACTAAAGATGAAATCCAAGGAGAGATGGAGAGTTTTTCGATTACAACCGATGACTTCGGTGACCTTTCCGATGGAAATTTATTGGAAAGCATTAACTTCGACGACTTTTTTGTTGGCATCAACGTGGATGGAGACATTTTGCCCGATTTGGATATGGACTCGGAGATGTTTGCCGAGTTCTCAGCCGGTTATGGAGAGGAATCTGATATAAACTCATCCGCTATAAACAAAACAGATGAAAAGAATTATTCAAAAAACCAAGAAGACAAAACAATTTATTCAGGTCGTCAAGGTTCGGAAGAGACGGTGAGCAAAAGGGATGAATCTGTAGTTGTGAATCCTCCATTTCAAAAAGATGGTGGTGGGAAAGGAAAAAAATCATCAAGTCAATCTAAAAACGCTCAAGGGAAGAAGAAAGTCAAGGTGGATTGGACACCAGAATTGCATAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGGGTGGATAAAGCGGTGCCTTCAAGGATTTTGGAGCTTATGGGAATTGATTGCCTCACTCGCCATAACATTGCCAGCCATCTCCAGAAATATAGGTCACATAGAAAACATTTACTAGCACGTGAAGCAGAAGCAGCAAGTTGGAATCAAAGGAGACAAGTGTATGGTGGTGTAGGAGGAAAAAGAGAGGTGATAAGTCCATGGCCAACTGCTGCAGCAGCACCAATCATGGGTTTTCCTCCTACTCCTACCCCTCCACCTCCCATGACTCCACTGCACCATCATTTTAGACCCTTGCATGTATGGGGGCATCCTTCAACGGACCAGTCTTTTATGCATATGTGGCCTAAGCCGCAGCCGCCGCAGCCTCTCTTGTGGCCACCAGCGGCAGCTCCTCCTCCACCTCAAGACCTTTCATTTTGGCATTCTCACCACCAATTGACTCCAAACGCAATAATCCCACGAACACACTGTTTCTCACAACCTCTGACAACAGTGAGATCACTTGGATGTCCAATTCCCGGCGGCATCCAACCCCATGGTATGTACAAAGCAGATCACACCATTGCGGCTCCCGGACCCGCTCCCTTCGACTTCCATCCGTCAAAGGAGAGCATAGACGCAGCTATTGGAGATGTTTTATCAAAACCATGGTTGCCGCTACCACTTGGACTTAAAGCTCCAGCAATTGATAGCGTAATGGGTGAACTACATAAACAAGGAGTTTCAGACATTCCACCCTCGTGCGCTTAG 1257 0.4622 MLAVSPLRNTKDEIQGEMESFSITTDDFGDLSDGNLLESINFDDFFVGINVDGDILPDLDMDSEMFAEFSAGYGEESDINSSAINKTDEKNYSKNQEDKTIYSGRQGSEETVSKRDESVVVNPPFQKDGGGKGKKSSSQSKNAQGKKKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILELMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQVYGGVGGKREVISPWPTAAAAPIMGFPPTPTPPPPMTPLHHHFRPLHVWGHPSTDQSFMHMWPKPQPPQPLLWPPAAAPPPPQDLSFWHSHHQLTPNAIIPRTHCFSQPLTTVRSLGCPIPGGIQPHGMYKADHTIAAPGPAPFDFHPSKESIDAAIGDVLSKPWLPLPLGLKAPAIDSVMGELHKQGVSDIPPSCA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02264 418 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 417 IPR044825 GO:0003700|GO:0045893
Trre7g02264 418 Gene3D - 145 206 - -
Trre7g02264 418 MobiDBLite consensus disorder prediction 77 150 - -
Trre7g02264 418 FunFam Two-component response regulator 144 207 - -
Trre7g02264 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 204 IPR017930 -
Trre7g02264 418 Pfam Myb-like DNA-binding domain 151 200 IPR001005 -
Trre7g02264 418 SUPERFAMILY Homeodomain-like 147 205 IPR009057 -
Trre7g02264 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 148 202 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02264 Trre-Chr7 18099224 18103161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02264 1 291 G2-like Transcription Factor Family AT5G44190 44.481 7.48e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre7g02264 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02264 - - aprc:113858121 505.753