Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02234 ATGGTGAACAAGAGAAATGTAAGAGAATGCGAAGGAGTGGAAAAGACAAGTGAAGAAAGGAACACGGAATGGAAACAGATAAGGGAAGAGGCGGCATCGGTAACAGCTGCTCTACTTAGAGTTCGAAGAGCAAGAAAACGTTACATTGGTGTGAGACAGAGACCTTCAGGAAGATGGGTGGCTGAGATCAAAGACACCATACAGAACATAAGACTATGGTTGGGGACTTATGACACTGGCGAAGAGGCTGCTAGAGCTTATGATGAAGCTGCACGTTTGCTTCGTGGTGCAAACACCCGCACAAATTTTTTTCTTTGCCAATCTTCTTCTCATTATGTTCCTTCTCTTCCTCCAAAGATTGCCAAAACCTTGCTTCTAAGGCTCAAAGCAAGAAACATTGCCTCTTCTTGTATTCCTACTACTTTTCCTACTAACCACTATGATGATCAAGAAAACAAAGCACAACCTCAACCCCCTTTTTTTCACCAAATAGAAGAAAACTATATAGAAATTTATGATGGTGCTAGTTATGGTTCTTCTGACATAACTACTAATGACTCTGAAGAAAATGTAAACCAAGAGGGTAGCAGAGAGGATTTTAGATTGGGATATCATTGTGCTAACAGTGTCGGTGATGGTGAAAACAACCAGATTGCGGAGTGTAATGTTGAATTTGAAAACAGTGATGCTGGAGTCATTGACTTCCAGTTTCTGGATACTGTCGGATCATTAAGTCACTTTTACTCTTCTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGGCCAATGGCAGACGAGAAATATGACGTAGATGATTCACTGTTACTTAGAGAAACATTTAGAATGAAGTATGAACGCAAATTCTCAGCTTGTCTATACACCTTGATTGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGGCCAGAAAATGGAAATGATTTCTAA 945 0.4085 MVNKRNVRECEGVEKTSEERNTEWKQIREEAASVTAALLRVRRARKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTGEEAARAYDEAARLLRGANTRTNFFLCQSSSHYVPSLPPKIAKTLLLRLKARNIASSCIPTTFPTNHYDDQENKAQPQPPFFHQIEENYIEIYDGASYGSSDITTNDSEENVNQEGSREDFRLGYHCANSVGDGENNQIAECNVEFENSDAGVIDFQFLDTVGSLSHFYSSSPFEIAEEMVGPMADEKYDVDDSLLLRETFRMKYERKFSACLYTLIGVSECLRLQVGPENGNDF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02234 314 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Trre7g02234 314 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Trre7g02234 314 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Trre7g02234 314 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Trre7g02234 314 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Trre7g02234 314 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Trre7g02234 314 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Trre7g02234 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 200 - -
Trre7g02234 314 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Trre7g02234 314 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02234 Trre-Chr7 17883986 17884930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02234 45 103 AP2-EREBP Transcription Factor Family AT5G19790 76.271 4.29e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre7g02234 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02234 K09286 - gmx:100793940 364.385