Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02226 ATGGCTACTATGTTTTCTGGAGGTTCTGTCTCTCCCTTTCTTTTTCACAGCAACAAAAGCATGTCATTTACACCCAAAATTCCAAGTCTTCAGCTGAAGAGACCTATCTCTGCAAAATCAGTAGCTTCTGTAGGAACTGATACATCACTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTTCAAGAAGAAGGTGTTATCACTGCAAAGACACCTGTGAAAGCTAGTGTGGTTCCAGAAGGTCTAGGATTGGTTGCACTCAAAGACATTTCTAGGAATGATGTTGTTTTGCAGGTACCAAAAAGGCTGTGGATAAATCCAGATGCAGTTGAAGCTTCAGAGATTGGGAGAGTATGCAGTGAGTTGCAGCCATGGTTATCTGTTATACTCTTTCTCATAAGAGAGAGGTCAAGGAGTGATTCTATTTGGAAGCACTACTTTGGTATTCTGCCACAAGAAACTGATTCTACTATATATTGGTCAGAGGAAGAGCTCCAAGAAATCCAAGGTACTCAACTTCTGAACACAACGCTATCTGTGAAAGAATATGTGAAGAATGAATGTCTTAAACTGGAAAAAGAGATCATTCTCCCTAATAAGCGGCTTTTTCCTTCTCCTGTAACACTGGATGACTTCTTCTGGGCATTTGGGATTCTCAGATCAAGGGCATTTTCTCGCCTTCGGAATGAAAATCTAGTTATAATTCCACTGGCAGACTTGCTTAACCACAGTGCAAGGGTAACTACAGCAGATCATGCTTATGAAGTTAAAGGACCAGCTGGTCTTTTCTCTTGGGATTACCTGTTTTCCGTAAGGAGCCCCCTTTCTGTCAAAGCTGGAGAACAGGTATATATCCAATATGATTTAAACAAAAGCAATGCAGAGTTGGCTTTGGATTACGGTTTCATTGAACCAAATGCAGATCGACATGCATACACCTTGACACTGGGTATATCTGAGTCAGACCCTTTTTTTGATGACAAACTAGACGTTGCTGAGTCCAATGGTTTCGCTCAGACAGCATACTTTGATATCTTCTACAACAGTCCCCTTCCACCAGGGATGATTACATATCTGAGACTAGTAGCGCTAGGTGGTACCGATGCTTTCTTATTGGAATCGTTGTTCAGAAACTCCATATGGGGTCATCTTGAGTTGCCAGTGAGCCGTGACAATGAGGAGCTATTGTGCAAAGCGGTTCGAGACGCCTGCAAATCCGCCCTTGCTGGTTATCATACAACCATTGAACAGGATCGCAAGTTGAAAGAAGAAAATCTAGATTACAGGCTTGCAATAGCAGTTGGAGTAAGAGAAGGAGAAAAGATGGTCCTGCAGCAAATTGATGAGATCTTCGAACAGAAAGAATCGGAACTAGACCAGTTGGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGGCTTTGCGGCGAAACTGGTGATGTCCTTGGCGACCTTGGAAAATTCTTCTAA 1470 0.4252 MATMFSGGSVSPFLFHSNKSMSFTPKIPSLQLKRPISAKSVASVGTDTSLSPAVQTFWKWLQEEGVITAKTPVKASVVPEGLGLVALKDISRNDVVLQVPKRLWINPDAVEASEIGRVCSELQPWLSVILFLIRERSRSDSIWKHYFGILPQETDSTIYWSEEELQEIQGTQLLNTTLSVKEYVKNECLKLEKEIILPNKRLFPSPVTLDDFFWAFGILRSRAFSRLRNENLVIIPLADLLNHSARVTTADHAYEVKGPAGLFSWDYLFSVRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNADRHAYTLTLGISESDPFFDDKLDVAESNGFAQTAYFDIFYNSPLPPGMITYLRLVALGGTDAFLLESLFRNSIWGHLELPVSRDNEELLCKAVRDACKSALAGYHTTIEQDRKLKEENLDYRLAIAVGVREGEKMVLQQIDEIFEQKESELDQLEYYQERRLKDLGLCGETGDVLGDLGKFF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02226 489 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 430 - -
Trre7g02226 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 50 302 - -
Trre7g02226 489 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 3 487 IPR011192 GO:0009507|GO:0030785
Trre7g02226 489 SUPERFAMILY SET domain 50 309 IPR046341 -
Trre7g02226 489 PIRSF RMT_SET 1 488 IPR011192 GO:0009507|GO:0030785
Trre7g02226 489 CDD SET_RBCMT 65 303 IPR044431 GO:0016279|GO:0018022
Trre7g02226 489 Pfam SET domain 81 287 IPR001214 GO:0005515
Trre7g02226 489 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 311 482 IPR036464 -
Trre7g02226 489 Gene3D set domain protein methyltransferase, domain 1 50 303 - -
Trre7g02226 489 ProSiteProfiles SET domain profile. 64 288 IPR001214 GO:0005515
Trre7g02226 489 Gene3D - 304 468 IPR036464 -
Trre7g02226 489 SMART set_7 71 294 IPR001214 GO:0005515
Trre7g02226 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 304 468 - -
Trre7g02226 489 Pfam Rubisco LSMT substrate-binding 320 444 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02226 Trre-Chr7 17827259 17830257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02226 51 243 NAC Transcription Factor Family AT3G56570 29.703 6.92e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g02226 SET 5.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02226 K00592 - ag:AAA69903 885.56