Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02222 ATGGCAACAGCAACAGAAGAAGAACAAGAAGATTATATGCAACAACTCAGATCCAAAGCAACAGAACTTTTCATAAGAGAAGAATGGAACGATTCAATCCAATCATATTCCCATTTCATCACTCTCTGCACTCACCATCTTTCTCTTCCTCACTCTGACCAACAAAAACTTCGCAAATCTCTCTGCATAGCTCTCTGTAACCGCGCCGAAGCGAAATCGAGATTACGTGATTTCAACTCTGCATTGCAAGACTGTGATCATGCTTTGCAAATTGATGCTACCCATTTCAAAACCCTAGTTTGCAAAGGTAAGATTTTGCTTTCTCTTAATAGATACTCAATGGCTCTTCATTGCTTTAAAATAGCTCTGCTTGATCCTCAAGCTAGTGGGAACTCTGAATTTCTTGTTGGGTATTTTGAAAAATGTAAAAAGTTTGAATTTTTATCAAGGACTGGGAATTTGGATCTTTCTGATTGGGTTTTGAATGGGTTTCCTGGTAAGGCTCCTGAACTTGCTGAGTATATTGGTGCTGTTGAGATTAGAAAATCGGAAATTAGTGGGCGTGGGGTTTTCGCTACGAAGAATATTGATGCAGGGTCTTTGATTTTGGTTACTAAGGCAATTGCAATGGAGAGGAGTATATTGGTAGGTAAAGATTTGAGTGAGGATACACAATTAGTTATGTGGAAGAATTTTATTGATAAAGTTGTTGATTTTGTTAGAAAATGTCATAAGACTAGGGATTTGATTGGTAAATTGTCAATTGGGGAAAATGAGGATGAACTTGATGTGCCTGATGTAGATCTCTTTAGGCCTGAGAGTATTGGTGAAGTGAATTCAAGTGAGGATATTGATGTTGATATGGTTAAGTTATTGGCTATATTGGATGTTAATTCTCTCACTGAGGATGCGGTTTCGGCCAATGTTTTGAGGAAGAATAATGATTGTTATGGTGTTGGGTTATGGTTGCTTCCTTCATTCATCAATCACTCATGTTGTCCTAATGCGAGACGATTGCATGTTGGGGATTATTTGATAGTTCATGCTTCGAGAGATTTGAAAACCGGTGAAGAGATAACTTTGGCCTATCTTGATCCACTTACTCCCTTGAACAAGAGAAAAGAGATGTCTGTGACATGGGGGATTCATTGTAAGTGTAAGAGGTGCAAGTTTGAAGGGGAAATCTTTTTCTCCAAGCAAGAGATGAAGGAGATTGAGATTGGTATCGAAAGAGGGATGGATGTGGGTGGTTTGGTGTATAAACTTGAGGAACAAATGAAGAGATGGAAGGTTAGGGGGAAAGAGAAGGGATACTTGAGGGCTTCATTTTGGTCTTTATGTTCGGAGGCTTATGGTTCGGAGAGGTGTATGAAAAGATGGGGAAGGAGGATTCCAGCATTGGATGCAGTGGTTGACAGTATCACAGATGTAGTAGGAGGTGATCACAGGGTGCTCAAGATTTTGATGGAAGAATTGAAGAAAAAAGGCGGTGGTAGTGGCGGTGGAAATTTAGAGATGGAGAAAGTTTTCAAGTTAGCAAGAGAAGTGTATGGAAAGGTAGTGAAAAAGCAAGCAATGAGGACACTGCTTGAGCTTTGCATTGCTGATTGA 1611 0.3966 MATATEEEQEDYMQQLRSKATELFIREEWNDSIQSYSHFITLCTHHLSLPHSDQQKLRKSLCIALCNRAEAKSRLRDFNSALQDCDHALQIDATHFKTLVCKGKILLSLNRYSMALHCFKIALLDPQASGNSEFLVGYFEKCKKFEFLSRTGNLDLSDWVLNGFPGKAPELAEYIGAVEIRKSEISGRGVFATKNIDAGSLILVTKAIAMERSILVGKDLSEDTQLVMWKNFIDKVVDFVRKCHKTRDLIGKLSIGENEDELDVPDVDLFRPESIGEVNSSEDIDVDMVKLLAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLIVHASRDLKTGEEITLAYLDPLTPLNKRKEMSVTWGIHCKCKRCKFEGEIFFSKQEMKEIEIGIERGMDVGGLVYKLEEQMKRWKVRGKEKGYLRASFWSLCSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKKKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLELCIAD 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02222 536 Gene3D SET domain 282 393 IPR046341 -
Trre7g02222 536 SMART set_7 176 370 IPR001214 GO:0005515
Trre7g02222 536 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 6 531 - -
Trre7g02222 536 Pfam SET domain 187 363 IPR001214 GO:0005515
Trre7g02222 536 CDD SET_SMYD 292 389 - -
Trre7g02222 536 SUPERFAMILY TPR-like 8 123 IPR011990 GO:0005515
Trre7g02222 536 Gene3D SET domain 176 263 IPR046341 -
Trre7g02222 536 Gene3D Tetratricopeptide repeat domain 6 143 IPR011990 GO:0005515
Trre7g02222 536 SMART tpr_5 96 128 IPR019734 GO:0005515
Trre7g02222 536 SMART tpr_5 62 95 IPR019734 GO:0005515
Trre7g02222 536 SMART tpr_5 13 46 IPR019734 GO:0005515
Trre7g02222 536 ProSiteProfiles SET domain profile. 176 364 IPR001214 GO:0005515
Trre7g02222 536 SUPERFAMILY SET domain 177 390 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02222 Trre-Chr7 17760063 17761673 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g02222 SET 3.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02222 - - mtr:11446296 946.806