Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02216 ATGAAAGCATGGCCAGCAATGCAATCTTCTTCTTCATCTACTACTAGTTATTCTTCTCCTTCAATGGGAATGGTCTATGCAAACATGGACTCTCTATCACTTAACTATGCTGCTGCTTCTTCTTCTTCATCTCAAGATTTCTATGTCTCAAAGGAAGGTACTAATAACACTACTACTCCTAACTGGTCTTTACCATTTATGAGTGAATGTTGTATTGCAAGAAACTTTGAGGAAAACCAAAACAGTGATGATGTTGGAGAAGGTAATAATGGTTCTGATTCTGGTGGAGAAAACAACAGTGACAAAATTAACCCTAATGACAATAATTATGTCAGTGGCAAAGAGGTAATTGATACTGGTCATTCTAAACTATGTGCTAGAGGTCATTGGAGACCTGCTGAAGATTCTAAGCTCAAAGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAATCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGTAAGAGTTGTAGACTTAGATGGTTCAACCAATTGGATCCAAGGATTAATAGAAGAGCTTTTAGTGAAGAAGAGGAAGAAAGACTAATGCAAGCTCATAGGATTTATGGAAACAAATGGGCCATGATTGCTAGACTTTTTCCTGGAAGAACTGATAATGCTGTTAAGAATCACTGGCATGTTATAATGGCTAGAAAGTACAGAGAACAATCCAGTGCTTACAGAAGAAGGAGACTGAATCAATCTGTTTACAGAAGAATAGAAGATAATGTAATAACCTCAGGGATGATGGAACCAGTACTACCATCACCCTATTGTATTAACATTAACCTCCCAAATGGTTATAACAACATGAATACTTTTCCATTTTCATCTTTCCATGGAGTAATTGATGGTGGTGGTGTTGATTGTGGCATAAATGGTTCACCTCATTTGTCTTCTAGCAAAGAAGCAATCTCAAGTAAAAAACAAACCCCTAATAGTCCTTATGGCTTGTTTTCTCAACAATCACCACTTGATTTCATTTCTGGAGGTATAAGAAATGATCATTATAGCCAAATGAAAAGCTGGGATAGGCCAAGTGATTTACACAATCAACCAAGTGGTTTTTACCATCAATATATGATGCAAATGCAACAACAAAACAACAATTTTTACAGTTTCACATCAAATTCAACCACAGCAGCAGCAGCAACATCAACAACACAGATATTAGGCAGTGAAGTTTCACTATCATCAGTTGTAGCAGTAGAAGATCACAGAGATGAAGTTATGATGAGTAATACTAATACATCTCCTTCAGATACAATTCCATTTATTGATTTCCTTGGAGTAGGAGCCACAACAACAACAACATGA 1341 0.3676 MKAWPAMQSSSSSTTSYSSPSMGMVYANMDSLSLNYAAASSSSSQDFYVSKEGTNNTTTPNWSLPFMSECCIARNFEENQNSDDVGEGNNGSDSGGENNSDKINPNDNNYVSGKEVIDTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRIEDNVITSGMMEPVLPSPYCININLPNGYNNMNTFPFSSFHGVIDGGGVDCGINGSPHLSSSKEAISSKKQTPNSPYGLFSQQSPLDFISGGIRNDHYSQMKSWDRPSDLHNQPSGFYHQYMMQMQQQNNNFYSFTSNSTTAAAATSTTQILGSEVSLSSVVAVEDHRDEVMMSNTNTSPSDTIPFIDFLGVGATTTTT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02216 446 CDD SANT 181 221 IPR001005 -
Trre7g02216 446 SUPERFAMILY Homeodomain-like 127 220 IPR009057 -
Trre7g02216 446 Gene3D - 180 247 - -
Trre7g02216 446 MobiDBLite consensus disorder prediction 1 20 - -
Trre7g02216 446 FunFam MYB transcription factor 127 178 - -
Trre7g02216 446 ProSiteProfiles Myb-like domain profile. 127 173 IPR001005 -
Trre7g02216 446 FunFam MYB transcription factor 180 249 - -
Trre7g02216 446 ProSiteProfiles Myb-like domain profile. 174 224 IPR001005 -
Trre7g02216 446 Pfam Myb-like DNA-binding domain 127 173 IPR001005 -
Trre7g02216 446 Pfam Myb-like DNA-binding domain 179 222 IPR001005 -
Trre7g02216 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 173 IPR017930 -
Trre7g02216 446 Gene3D - 127 178 - -
Trre7g02216 446 PANTHER MYB PROTEIN-RELATED 110 321 - -
Trre7g02216 446 SMART sant 178 226 IPR001005 -
Trre7g02216 446 SMART sant 126 175 IPR001005 -
Trre7g02216 446 CDD SANT 130 171 IPR001005 -
Trre7g02216 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 228 IPR017930 -
Trre7g02216 446 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02216 Trre-Chr7 17678513 17680476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02216 101 239 MYB Transcription Factor Family AT1G69560 76.712 1.58e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre7g02216 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02216 K09422 - gmx:100804537 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02216 7 17678513 17680476 Trre7g02216 7 17678513 17680476 ECH