Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02213 ATGACAGAGGTTAAAGACCCTGCGATAAAGCTTTTTGGAAGGACAATTCCGCTTCCACTGATCATCCCTAATGAATCTTCAACTCCATCTTCTTCTCCTTCTCCACCAGAATTGAACTCTGCAATACAGCAAGAAACTGAGGAACCGTCAAGGAAAGAACTCGCCACAATACAAGATGATGATGCGTCACAACAGACCGCAGAGGATTTAAAATCTCTCACAACATCTTCAGTCATACTTGAGAATCCTCCTAAGACTCCCTCAGCCGAAACCGAGAATTCATTACTGAAATCTTCTACAAATGGAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTAAAGAAACCTGACAAAATAATTCCATGCCCGCGATGCAATAGTATGGACACCAAATTTTGTTACTTCAACAATTACAACGTTAACCAGCCTCGTCATTTTTGCAAAAAATGTCAACGATACTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGTGCTGGTCGCCGCAAGAACAAGAACTTGTCTAGCTCGCATTATCGACACTTGATGATTCCAGAGGCTGCTAAACTTAATTCCCCTAATGGATTACATATGGGAAATGGAGCAGCTGTCTTGGCGTTTGATTCAGGTTCGCCGCTTTGTAATACCATGGCTTCTGTATTGAACATTGCTGAGAGAACACAGAATTGTGTGCCAAATGGTTTTCATCATGCAAATGGTCACTCGAACGGAGTTTCGGTTACAACTTCAACTTCATCAGAGAGGAAAGGCCACACTGACACCAATGGATCGGTGGATAAAAGAGTTGAAGGTTTCCCTCCTCAATTGCAATATATTCCAAGTCCTCTTTTGCCCTATCCATGGAGTTCTGCAATGCCTCCTCCTGCATTTTGTCCACCAAACTATCCATTAGCATTCTATGCTCCAGTAACTCCACCTGCATATTGGGGTTGTGTGCCACCACCATGGAATATGCCATGTATCTCATCAGAAAGTGCTTCTGTTAACCACAGTGACTCTGCTCATAGTTCTGTCCCATATTCACCGACTTTAGGGAAACATTCAAGAGATGGAAACATCATTACCTCAGTCAACTCACAAAAAGAAAATCCGGATAAAGAACACAATAATACCGAAAGCAGCGTTTTGACCCCGAAAACACTTAGATTTGACGACCCAAATGAAGCAGCAAAGAGTTCTTTATGGTCAAAGCTTGGGATCAATAATGAAAAAGCCAATTCTATCAATGGAGGAGGCATGTTCAATGGATTTCAATCCAAAGGAAAGGAAATGAATCACTCGGTTGAAGCATCTCCGCTGATGTATGCCAACCCTGCAGCTTTATCGCGGTCCCGTACCTTTCACGAGGGAACCTAA 1386 0.4271 MTEVKDPAIKLFGRTIPLPLIIPNESSTPSSSPSPPELNSAIQQETEEPSRKELATIQDDDASQQTAEDLKSLTTSSVILENPPKTPSAETENSLLKSSTNGEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLMIPEAAKLNSPNGLHMGNGAAVLAFDSGSPLCNTMASVLNIAERTQNCVPNGFHHANGHSNGVSVTTSTSSERKGHTDTNGSVDKRVEGFPPQLQYIPSPLLPYPWSSAMPPPAFCPPNYPLAFYAPVTPPAYWGCVPPPWNMPCISSESASVNHSDSAHSSVPYSPTLGKHSRDGNIITSVNSQKENPDKEHNNTESSVLTPKTLRFDDPNEAAKSSLWSKLGINNEKANSINGGGMFNGFQSKGKEMNHSVEASPLMYANPAALSRSRTFHEGT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02213 461 Pfam Dof domain, zinc finger 120 176 IPR003851 GO:0003677|GO:0006355
Trre7g02213 461 ProSitePatterns Zinc finger Dof-type signature. 124 160 IPR003851 GO:0003677|GO:0006355
Trre7g02213 461 MobiDBLite consensus disorder prediction 334 390 - -
Trre7g02213 461 ProSiteProfiles Zinc finger Dof-type profile. 122 176 IPR003851 GO:0003677|GO:0006355
Trre7g02213 461 MobiDBLite consensus disorder prediction 334 370 - -
Trre7g02213 461 MobiDBLite consensus disorder prediction 244 273 - -
Trre7g02213 461 MobiDBLite consensus disorder prediction 21 45 - -
Trre7g02213 461 PANTHER CYCLIC DOF FACTOR 2 2 460 IPR045174 GO:0003700|GO:0006355
Trre7g02213 461 MobiDBLite consensus disorder prediction 20 114 - -
Trre7g02213 461 MobiDBLite consensus disorder prediction 244 261 - -
Trre7g02213 461 MobiDBLite consensus disorder prediction 59 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02213 Trre-Chr7 17639978 17642483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02213 4 459 C2C2-Dof Transcription Factor Family AT5G39660 38.845 2.30e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre7g02213 zf-Dof 9e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02213 7 17639978 17642483 Trre7g02213 7 17639978 17642483 ECH
Trre7g02213 7 17639978 17642483 Trre5g01694 5 12356096 12358808 ECH