Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02200 ATGGCTTTGACGATGAGGGCTGCAGTGGCAGCGGCGGCGGCTCCCCGTAGTTTACGCCGACTTTTCTGCACCAACCCAACCGCTTCTTCTCCCACTTTCCCTTTCACTTCAACGCCGCCTTCCGGAACTACTTCCACTCGACAGATGGCGGATCCCAGCACCAACCTCTTCGTCTCCGGGCTTAGCAAACGTACTACAACAGAGAATCTGAAGGCAGCATTTCAAAAGTTTGGTGAAGTTGTTCAAGCTAGGGTGGTAACTGATCGAGTCTCAGGTTACTCCAAAGGGTTTGGTTTTGTGCAATATGCTACTCTAGAAGATGCTGCTAAGGGCATCGAAGGCATGGATGGCAAGTTTTTGGATGGCTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCCGGAGAAGCTGCAAGTAATACAAATAGGCAGTATAGCCGACCTTACTAA 456 0.5022 MALTMRAAVAAAAAPRSLRRLFCTNPTASSPTFPFTSTPPSGTTSTRQMADPSTNLFVSGLSKRTTTENLKAAFQKFGEVVQARVVTDRVSGYSKGFGFVQYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGEAASNTNRQYSRPY 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02200 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Trre7g02200 151 SUPERFAMILY RNA-binding domain, RBD 36 148 IPR035979 GO:0003676
Trre7g02200 151 CDD RRM_SAFB_like 55 128 - -
Trre7g02200 151 Gene3D - 28 144 IPR012677 -
Trre7g02200 151 SMART rrm1_1 55 128 IPR000504 GO:0003723
Trre7g02200 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Trre7g02200 151 FunFam RNA recognition motif-containing protein 35 144 - -
Trre7g02200 151 MobiDBLite consensus disorder prediction 32 53 - -
Trre7g02200 151 MobiDBLite consensus disorder prediction 131 151 - -
Trre7g02200 151 PANTHER NUCLEOLAR PROTEIN 8 38 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02200 Trre-Chr7 17536901 17539298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02200 23 134 Eukaryotic Initiation Factors Gene Family AT3G11400 29.787 7.10e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02200 - - psat:127105180 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02200 7 17536901 17539298 Trre7g02200 7 17536901 17539298 ECH