LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g02191	ATGGGAATTCAGAAATATATGGTTATCATAAAGTTTAGTTTTTGTGTTCTTTTAGTTCTGCATCTTGTAGCAGCAGTTAGCGTTATAGAAAAGAAGGAAATACAAGATGGTTTTGTTAGAGACCTATTTCATTCAGCATCTGGATTGTTAGATGAGCACACGGCTAAGGTATTAAGGACCACCTGCTGTGAAGATTTTATTCATTTAAAGAAAGAGGTATATCGTGATTTATGCCTCCCACTGGAATTGTTTGCTGGCACCAATAAACTCAGTTCAACAATTCAACCATTTGCACAAGCAGATATCCAAAAATTGCTTAATGGTTGCCATCCTCAAATCAAGGAAAACTTTCTTCATTGTTTGAGAAAAAATAATCTATTATTTGTCTCAGGAGAAAAAGACGATGATTCCAAGAAATGGCATGTCACAAATACGGGATATCTTTTTTCCACATCCAGTATTCCTAGAAGAAATCAGGCCCGTGTTTTGCTCCAGCTCATATCAGAACCACCTAGTTCAGACCCCGCAGTTGGATCACCTACACCGAGTCTCACTCCAGCACCTGAACCCATTCTTGCGTTATCGCCTGAACCCAGTCTATCTCCATCACCTGCTCCAGGGCCTCTACTTCCGAAACCTCCATCCCCTTCTTTCTCACCAACTCCATTTTTCCCAAAACTTACACCACCAGCAGCTGCTGATATTTCTGCTCCTCCATCTGCTGACACGAACGGGAAGGATAATAATGATAGTACAAAAAGAACAGTTGTTCTTTCTGTAGTTATAACTATATTGGTGATATTTATAGTTGGAGCACTGTTCTTTTTATGCCTGCGTAAGAATCGCCGGCTTAGACAAAATGATGAGAGGCCACTTCTCAGTTTGAGCATGAATGACTATTCTTTTGGTCCTTCCAATCATGCTTTTGGAAATTCGACAAAAGGGGAGAAACATGGGTTTCAGTCATCAAGTAATGATTTAGGAAACAACAAGAAGACCTCGCTGCAAGAAAACCAATCAATAGGAGCTCATACTGCTGCCAGATTACCATTTGAATTGACACCTCCTCCTGGGAGAGTGGGAACTGTCCATTCTGGAATGCCACCTTTAAGACCTCCTCCAGGAAGAATGAATCCTCTTCCCCCTGAGCGACCTTCATTTAGGCCTTCTAGTAATACTGCCGTCTCTACTACTGCTACAATTCCTCCCCCTCCTCCTCGACAGTCTGGTGTTGGTAGTGCTCGACCTCCTGCTACTTCTTCACCACATTCAACACTAGCCGGTGCCAAACCTGCTGCTCCTCGTCCTCCACTACCCCCTGCTCCGTCTGGTGCCAAACCTAGTCCTCCACCACCCCCTGCTCCGCCTGGTGCCAAACCTAGTCCTCCACCACCCCCGGCACCACCTGGTGCCAAACCCGGTCCTCCTCCCCCACCACCACCAGCACCACATGGTGCTAAACCTGGTCCTCGTCCACCACCTCCTCCTCCTCCTAAGAGTGGTGTAGCTCCTCCTCGTCCTCCAATTGGCCCAAAGGTTAGTGGACTAAAAGCTACAGCGAATGCTGAAGCAGTTGCAGAAGGTGGAGCTGATACTTCCAAAGCCAAACTAAAGCCATTTTTCTGGGATAAGGTTCAAGCTAATTCAGATCAATCAATGGTTTGGAATCAGATCAAATCAGGATCATTCCAGTTTAATGAAGAGATGATAGAGACACTTTTCGGTTATAATGCTGTAAATAAAAACAATGGTCAGCGACAAAAGGAGTCTTCCTCCTCCCAAGATCCGTCACCTCAGTATATCCAGATCGTTGACAAAAAGAAATCACAAAATTTATTAATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTTGTGATGCACTCTATGAAGGAAATGAGCTACCATCGGAGTTCCTTCAAACCTTGTTGAAGATGGCGCCAACATCAGATGAAGAACTTAAGCTTAGACTTTTTAGCGGTGATCTGTCTCAACTTGGGCCTGCTGACCGTTTCCTGAAAGCCATGGTTGACATTCCCTTTGCCTTTAAGCGAATGGACGTACTGCTTTTTATGTGTACATTTAAAGAGGAGCTCACTACTACTATGGAGTCTTTTGGAGTTTTAGAGGTTGCTTGTAAGGAACTAAAAAGCAGCCGGCTGTTCCACAAGCTTCTCGAAGCTGTTCTTAAAACTGGAAACCGTATGAATGACGGAACATACCGTGGTGGTGCACAAGCATTTAAACTTGATACACTTTTGAAATTATCCGATGTAAAAGGAACAGATGGCAAGACTACACTCTTACACTTTGTAGTTCAAGAGATTATCCGCTCCGAGGGCATAAAAGCTGCCCGAGCGGCAAAAGAGAGCCAGGAATTGTCCAATATTAAAGCGGACAAGCTTCTTGAAGATAACACGCGTGAAACAGAAGACCACTACCGCGAACTTGGTCTTGAGATGGTTTCGCACTTGAGCAGTGAGCTCGAGAATGTTAAGAGAGGTTCCGTTCTAGATGCAGACAGCTTAACAACTACCGCTACCAAACTTGGCCACGGTCTCGTTAAAGCCAAAGACCTACTGAACAAAAACCTGAAGAATGTGGAAGATGATAGAGGTTTTCGTGATACATTGGAAAGTTTTGTCCAAAATGCCGAGGCTGATGTTAAGAAACTGCTGGAAGATGAGAAGAAAATCATGGCTCTGGTGAAGAGCACAGGCGATTACTTTCACGGAAATGCAACAAAGGACGATGGCTTGCGATTGTTTGTAATAGTAAGAGACTTCTTAATAATGGTGGATAAGGTATGCAAGGAGGTGAGAGATGCACACAAGAAATCATCAAAACCTGTAAAACAAGAAACTTCACGAGGATCATCTTCATCTGATACACGTCCGCCACCTTCTGATTTTCGTCAGCGGCTTTTTCCGGCTATCACTGAAAGAAGGATAGATGACCTTAGTTCAGATGATGAGAGTCCATAG	2988	0.4394	MGIQKYMVIIKFSFCVLLVLHLVAAVSVIEKKEIQDGFVRDLFHSASGLLDEHTAKVLRTTCCEDFIHLKKEVYRDLCLPLELFAGTNKLSSTIQPFAQADIQKLLNGCHPQIKENFLHCLRKNNLLFVSGEKDDDSKKWHVTNTGYLFSTSSIPRRNQARVLLQLISEPPSSDPAVGSPTPSLTPAPEPILALSPEPSLSPSPAPGPLLPKPPSPSFSPTPFFPKLTPPAAADISAPPSADTNGKDNNDSTKRTVVLSVVITILVIFIVGALFFLCLRKNRRLRQNDERPLLSLSMNDYSFGPSNHAFGNSTKGEKHGFQSSSNDLGNNKKTSLQENQSIGAHTAARLPFELTPPPGRVGTVHSGMPPLRPPPGRMNPLPPERPSFRPSSNTAVSTTATIPPPPPRQSGVGSARPPATSSPHSTLAGAKPAAPRPPLPPAPSGAKPSPPPPPAPPGAKPSPPPPPAPPGAKPGPPPPPPPAPHGAKPGPRPPPPPPPKSGVAPPRPPIGPKVSGLKATANAEAVAEGGADTSKAKLKPFFWDKVQANSDQSMVWNQIKSGSFQFNEEMIETLFGYNAVNKNNGQRQKESSSSQDPSPQYIQIVDKKKSQNLLILLRALNVTMEEVCDALYEGNELPSEFLQTLLKMAPTSDEELKLRLFSGDLSQLGPADRFLKAMVDIPFAFKRMDVLLFMCTFKEELTTTMESFGVLEVACKELKSSRLFHKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKESQELSNIKADKLLEDNTRETEDHYRELGLEMVSHLSSELENVKRGSVLDADSLTTTATKLGHGLVKAKDLLNKNLKNVEDDRGFRDTLESFVQNAEADVKKLLEDEKKIMALVKSTGDYFHGNATKDDGLRLFVIVRDFLIMVDKVCKEVRDAHKKSSKPVKQETSRGSSSSDTRPPPSDFRQRLFPAITERRIDDLSSDDESP	995

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g02191	995	MobiDBLite	consensus disorder prediction	977	995	-	-
	Trre7g02191	995	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	598	958	-	-
	Trre7g02191	995	MobiDBLite	consensus disorder prediction	367	386	-	-
	Trre7g02191	995	Coils	Coil	876	903	-	-
	Trre7g02191	995	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	527	960	IPR015425	-
	Trre7g02191	995	MobiDBLite	consensus disorder prediction	169	251	-	-
	Trre7g02191	995	PANTHER	FORMIN-RELATED	166	984	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Trre7g02191	995	MobiDBLite	consensus disorder prediction	175	227	-	-
	Trre7g02191	995	MobiDBLite	consensus disorder prediction	943	995	-	-
	Trre7g02191	995	MobiDBLite	consensus disorder prediction	954	969	-	-
	Trre7g02191	995	MobiDBLite	consensus disorder prediction	306	333	-	-
	Trre7g02191	995	Gene3D	Formin, FH2 domain	533	965	IPR042201	-
	Trre7g02191	995	Pfam	Formin Homology 2 Domain	531	934	IPR015425	-
	Trre7g02191	995	SMART	it6_source	527	949	IPR015425	-
	Trre7g02191	995	MobiDBLite	consensus disorder prediction	432	511	-	-
	Trre7g02191	995	MobiDBLite	consensus disorder prediction	347	531	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g02191	Trre-Chr7	17411142	17417064	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g02191	253	986	FH2 protein (formin) Gene Family	AT5G54650	52.825	0.0	621

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g02191	-		-	gmx:100793413	763.837