Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02180 ATGGCAAGCAGCAGCAACTCCTTCCCTGCCTCAGCTCTGGTGACATTGCCAAAGAAAAGAAACAATTATGATGTGTTTGTCACCTTCAGAGGTGAAGACACTCGCAATAATTTCACTGATTTTCTTTTTAATGCCCTCGAAGATAAAGGCGTTTCTGTATTTAGGGATGACACTCATCTTCCAAAAGGTGATACCATTGGACCTGAACTCCTTTGTGCAATCGAAGCCTCTCAGGTTTTCGTCGTCATCTTCTCAAAGAACTATGCTTCCTCAACGTGGTGCTTGCAAGAATTGGAAAAGATATGTGAATGTGTTCAAGTGTCTGGAAAACATGTTTTGCCTGTTTTCTATGATGTTGATCCTTCTGAGGTGCGAAAGCAAAGTGGGATTTATGGTGAAGCCTTTGTCAAACATGAAACAAGATTCCAACAAGACTATGAGATATCGATGGTGCAAAGATGGAGGAAAGCTCTCACACAAGCCTTTGTCAAACATGAAACAAGATTCCATCAAGACTATGAGATATCGATGGTGCAAAGATGGAGGAAAGCTCTCACACAAGTGGGATCAAAATCTGGTTGGGATGTGCGTCATAAGAAACAATCGACACAGATTAAAGAGATTGTTCAAAGAATAATAAATATTTTGGATTGCAAATCTTCATGTGGTTCAAAAGATTTAGTTGGGATGGATTCTCCTATACAAGAATTACAAAGTCACTTACTTTTGAGCTCTGTTGATGATGTTCTGGCAGTAGGAATTTGTGGGATGGGAGGAATAGGGAAGACAACCCTTGCCACTGTTTTGTATGGTAGAGTCTCTAATCAATTTGATGCACGCTGTTTTATTGAAGATGTTAGCAAAGTTTATAGATCACATGATGGTCCACTTGGTGCACAAAAACAAATTCTATATCAAACAGTAGGCAAAAAACACAATCAGATATTCAATAAACATGACGCAATTAATCTGATGCAACATAGACTAGGTCGTGTAAGGACCCTTCTTATTCTTGATAATGTTGATCATGTTAAGCAACTAGAAATACTACCTGTGAATCGTGAATGGTTAGGCACAGGTAGTAGAATCATTATCATTTCTAGAGATGAACATATCTTGAGAAAGTATGGAGTGGATGTTGTTTACAATGTTCCACTCTTGAATAAGACTAACTCTCTAGAATTATTTTGTCGACAAGCTTTCAAACTTGATCATATTTTGAATAGTTATGAAGGTTTGGTTAGTAGCATATTGCATTATACCAATGGCCTGCCACTTGCAATTGAAGTATTGGGCTCATTTTTATATGATCGAAATATCTCTGAATGGAGAAGTGCATTGTCTAGATTGAGAGAAAGTCCAGACAAAGATATCATGGATGTGCTACAAATAAGTTTTGATGGGCTAGACAACGCGGAAAAAGAAATATTTCTTCACATTGCTTGCTTTTTTAACTCCACTAGCGTGGATTCTGTAAAAAATGTTCTAAATTGTTGTGAATTTCATCCTGATATTGGATTGAGAATTCTCATTGATAAATCACTTATAAGAATTGAGTCTTGTATGATTATAATGCATAATTTATTGCAAGAGCTAGGTAGAAAAATTGTCCAAGAAAGTTCAAGCGAAGAGTCAAGAAAGTGGAAAAGGTTGTGGCTTAAGGAACAATTACACGATGTTATGTCGGACCATATGGAAAAGAATGTTGAAGCCATTGTTTTGAAGCTTGATTTTAGAGGAGAAGAAGAAGTAGAAGAAAAAGAGATGATGATGGATGCAGTGATGATTGAATACTTTTCAAATCTTGAATTGCTCATCATCCCGCAAAAGATGGAATATGTGAATTCATCTGAAAGCCTCAGTTGTCTTTCTAACGAATTAAGATATCTTGAATGGTCAGAATACCCATTCATGTATTTGCCATCAAGTTTTCAGCCCATTCAACTTGTTGAGTTGAACTTGTCTCGAAGTAGTATCGAAAAACTGTGGGAAGGTAAAAAGTATCTGCCCAATTTGAGACATTTGAATCTATTCTATTCCAAAAATCTAATAGAGATACCAAATTTTGAAGAGTTCCCGAATCTTGAGCAGTTAGGTCTGGAAGGATGTGTAAAACTTGTGAAGTTGGATCCTTCTATTGGACTTCTAAAAAAGCTTTTTTACTTGAATTTGAGAAGGTGCTCAAGTCTAAAAAGCATACCCAACACCATATTTGGTCTCAGCTCTCTTGAATACTTATACATGAATGGCTGTTCCAAAGTGTCGTTTAACAATCCAAAGGCATCACATTCCCAGTCATCTTCAAATGTACCATACCTCATTATCATTCCACATTTCCCACTCCCCAGTCAGGCAATTTCGATGTATTGTTTGAGTACCATTGATATTAGTTTTTGTCGTCTAAGCCAACTTCCTGATGCAATTGGATGCCTACATCAGCTACGATGTTTAAATCTTATGGGAAACAATTTTGTGTCACTACTCAGCCTCAATCTCAATGAGTTTTCGAAACTTGTTTATTTAAACTTGAGTCATTGCCAGCTTTTGGAATCTTTGCCTCAGCTTCCTTTTCCCACTGCTATCAATTGGGATCTTGACACTACCAGATATCCTTTCAAAATAGGAATGCACATTTTCAACTGTTCTAAATTGGGTGAGAGGGAATGTAGAATTGCATTTTCATGGATGAAACAATTCATTCAAGCAAATCCACAATGCCCTCATGTGATTGATATTGTTATTCCTGGAAGTGAAATACCAACTTGGTTCAATAATCAAAGCGACGGTGATAAAATACTGATAGACAACTTCATTATACATGACATTAACAATGATATTGTTGGCTTTCTATGTTGTTCACTATTTTCTATAGAACCTAGTACTCAACCCTTTGGTTTATGCTACCGACATGATCGGGGAACAACTGGCCTCGTGATTATACTTCGTTTAACTGGTTTTTACTTAGATCGTGCAGTGGACATGACGTGTCATGAAAATTATCTCCCAGTATATTGGAAAGACCGAGATCTTATTAAGGTCAAAAGAAATCACATTTGGCTAACCTATTTACCCTGGAAGTTGTCCTCGTATGTTCTGGACTTTCATGGCACAATGCTTGTTAAATTTGGAAACTATCCACCTCGCAGCAATAATAAGGTGAAGAATTGCGGATATGGCTGGCTACATAAACAGGGTCTACAAGAGTTCAACTTAACAATGATGCATCCTGGAAACTCCTCAGCTCTGAAGAGCAAGATTTTGGCAATAGAAGACATTCATTCATCTGATTAA 3291 0.371 MASSSNSFPASALVTLPKKRNNYDVFVTFRGEDTRNNFTDFLFNALEDKGVSVFRDDTHLPKGDTIGPELLCAIEASQVFVVIFSKNYASSTWCLQELEKICECVQVSGKHVLPVFYDVDPSEVRKQSGIYGEAFVKHETRFQQDYEISMVQRWRKALTQAFVKHETRFHQDYEISMVQRWRKALTQVGSKSGWDVRHKKQSTQIKEIVQRIINILDCKSSCGSKDLVGMDSPIQELQSHLLLSSVDDVLAVGICGMGGIGKTTLATVLYGRVSNQFDARCFIEDVSKVYRSHDGPLGAQKQILYQTVGKKHNQIFNKHDAINLMQHRLGRVRTLLILDNVDHVKQLEILPVNREWLGTGSRIIIISRDEHILRKYGVDVVYNVPLLNKTNSLELFCRQAFKLDHILNSYEGLVSSILHYTNGLPLAIEVLGSFLYDRNISEWRSALSRLRESPDKDIMDVLQISFDGLDNAEKEIFLHIACFFNSTSVDSVKNVLNCCEFHPDIGLRILIDKSLIRIESCMIIMHNLLQELGRKIVQESSSEESRKWKRLWLKEQLHDVMSDHMEKNVEAIVLKLDFRGEEEVEEKEMMMDAVMIEYFSNLELLIIPQKMEYVNSSESLSCLSNELRYLEWSEYPFMYLPSSFQPIQLVELNLSRSSIEKLWEGKKYLPNLRHLNLFYSKNLIEIPNFEEFPNLEQLGLEGCVKLVKLDPSIGLLKKLFYLNLRRCSSLKSIPNTIFGLSSLEYLYMNGCSKVSFNNPKASHSQSSSNVPYLIIIPHFPLPSQAISMYCLSTIDISFCRLSQLPDAIGCLHQLRCLNLMGNNFVSLLSLNLNEFSKLVYLNLSHCQLLESLPQLPFPTAINWDLDTTRYPFKIGMHIFNCSKLGERECRIAFSWMKQFIQANPQCPHVIDIVIPGSEIPTWFNNQSDGDKILIDNFIIHDINNDIVGFLCCSLFSIEPSTQPFGLCYRHDRGTTGLVIILRLTGFYLDRAVDMTCHENYLPVYWKDRDLIKVKRNHIWLTYLPWKLSSYVLDFHGTMLVKFGNYPPRSNNKVKNCGYGWLHKQGLQEFNLTMMHPGNSSALKSKILAIEDIHSSD 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02180 1096 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 871 IPR044974 GO:0006952
Trre7g02180 1096 Gene3D - 386 470 IPR042197 -
Trre7g02180 1096 Gene3D Ribonuclease Inhibitor 776 909 IPR032675 -
Trre7g02180 1096 Gene3D - 221 381 IPR027417 -
Trre7g02180 1096 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 160 IPR035897 -
Trre7g02180 1096 Pfam Leucine Rich Repeat 648 667 IPR011713 -
Trre7g02180 1096 Gene3D - 162 220 IPR035897 -
Trre7g02180 1096 Gene3D - 17 161 IPR035897 -
Trre7g02180 1096 Gene3D Ribonuclease Inhibitor 575 771 IPR032675 -
Trre7g02180 1096 SMART till_3 22 164 IPR000157 GO:0007165
Trre7g02180 1096 SUPERFAMILY L domain-like 525 856 - -
Trre7g02180 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 480 IPR027417 -
Trre7g02180 1096 Pfam TIR domain 22 184 IPR000157 GO:0007165
Trre7g02180 1096 Pfam C-JID domain 914 1062 IPR045344 -
Trre7g02180 1096 ProSiteProfiles TIR domain profile. 21 216 IPR000157 GO:0007165
Trre7g02180 1096 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 173 - -
Trre7g02180 1096 PRINTS Disease resistance protein signature 421 435 - -
Trre7g02180 1096 PRINTS Disease resistance protein signature 251 266 - -
Trre7g02180 1096 PRINTS Disease resistance protein signature 328 342 - -
Trre7g02180 1096 PRINTS Disease resistance protein signature 833 849 - -
Trre7g02180 1096 Pfam NB-ARC domain 233 455 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02180 Trre-Chr7 17332974 17339075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02180 22 862 WRKY Transcription Factor Family AT4G12020 28.969 2.64e-77 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02180 - - mtr:11446628 1109.75