Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02179 ATGGCTAGCTGCAACAACTCCTCTGCCTTAGCTCTGGTGACATTGCCAAATAAGAGAAACAATTATGAAGTGTTTGTCACCTTCAGAGGTGAAGACACTCGCTACAGTTTCACTGATTTTCTTTTTAATGCCCTGGAAGATAAAGGAGTTTCTGTATTCAGGGATAACACTAATCTTCCAAAAGGCGAATCCATTGGACCCGAACTCCTTTGTGCAATCGAAGACTCTCAGGTTTTCACTGTCATCTTCTCAAAGAATTATGCTTCCTCAACTTGGTGCTTGCAAGAATTGGAAAAGATATGTGAATGTATTCAAGTGTCTGGAAAACATATTTTGCCTGTTTTCTATGATGTTGATCCTTCTGAGGTGCGAAAGCAAAGTGGGATTTATGGTGAAGCCTTTGTCGAACATGAACGAAGATTCCAACAAGACTATGAGATGGTGCAAAGATGGAGGAAAGCTCTCACGCAAGTTGGAACAATCTCTGGTTGGGATGTGCGTCATAAGCCACAATCGACACAAATTAAAGAGATTGTTCAAAGAATAATGAATATTTTGGATTGCAAACCTTCATGTGTTTCAAAAGATTTAGTTGGGATGAATTCTCCTATACAAGAATTACAAAATCATTTACATTTAAACTCTGTCGATGATGTTCGGGCTATAGGAATTTGGGGCATGGGAGGAATAGGCAAGACAACCCTTGCCAGTGCTTTGTATGGTAGAGTCTCTAATCAATTTGATGCATGCTGTTTTATTGATGATGTTAGCAAAGTTTATAGATCACCTGATGGTCCACTTGGTGTACAAAAACAAATTCTACATAAAACACTCGGCAAAGAACACAATCAGATATGGAATAATCATGACGCAATTAATCTGATGCAACGTAGACTAGGTCGTGTAAGGACCCTTCTTATTCTTGATAATGTTGATCATGTTAAGCAACTAGAAATAATACCTGTGAATCGTGAATGGTTAGGCACAGGTAGTAGAATCATTATCATTTCTAGAGATGAACATATCTTGAAAAAGTATGGAGTGGATGTTGTTTACAAAGTTCCACTCTTGAATTTCACTAACTCTCTAGAATTATTCTGCAGACAAGCTTTCAAACTTGACCATATTTTGAATAGTTATGAAGGGTTGGTTAGTAGCATATTGCATTATACCAATGGCCTACCACTTGCAATTGAAGTGTTGGGCTCATTTTTATATGATCGAAATATCTCTGAATGGAGAAGTGCATTGTCTAGATTGAGAGAAAGTCCAGACAAAGATATCATGGATGTGCTACAAATTAGTTTTGATGGGCTAGACAAGGCGGAAAAAGAAATATTTCTTCACATTGCTTGCTTTTTTAACTCTGTTGATGCAGATTATGTAAAAAATGTTCTAAATTGTTGTGGATTTCATGCTGATATTGGATTGAGAGTTCTCATTGATAAATCACTTATAAGAATTATAGATGAACATATTAGAATGCATAATTTACTGGAAGAGCTAGGTAGAAAAATTGTCCAAGAAAATTCAAGCAAAGAGTTAAGAAAGTGGAAAAGATTGTGGTCTAAGGAACAATTTCATCATGTTATGTCGGACCATATGGAAAAGAATGTTGAAGCCATAGTTTTGAAGAATGATGTTAGAGTAGAAGAAGAGATGATGATGGCTGCAATGATGGTTAAATACTTTTCAAATCTTAGATTGCTAATCATCAAGATGGATAGTGTCGCACCGGATAGTGTGGCATTAAGAAGTCTCACTTGTCTTTCTAGCGAATTAAGATATGTTGAATGGGCGAATTATCCATTCATGTATTTGCCATCAAGTTTTCAGCCTATTCAACTTTTTGACTTGATATTGTTTCAAAGTAGCATCAAACATTTATGGAAAGACAAAAAGTATCTGCCCAATTTGAGACATTTGTGTCTATCCTATTCCTATAATCTAATAGAGATACCAAATTTTGAGGAGTTCCCAAATCTTGAGCAGTTAAATCTGGCAGGATGTATAAAACTGGTGAAGTTGGATCCTTCTATTGGACTTCTAAGAAAGATTGTTTACTTGAATTTGGGAAGGTGTGAAAGTCTAAAAAGCATACCCAACACCATATTTGGGATGAACTCGCTTAAATATATAAACATGAGTGGGTGTTTCAAACTGTCGTTTAACAATCAAAGGGCATCACATTCCCAGTCAACTTCCCCATCTTTAAATGTACTACACCGCTATATCTTTCCTTTTTTCCCACTCCCGGATTATGCAGGGTGGTTATATTGTATGAGTGAAATTGATATTAGTTTTTGTGGTCTAAGCCAAGTCCCTGATGCAATTGGATGCCTACGTCAGCTACAAAGTTTAAATCTTGGTGGAAACTATTTTGTGTCACTAATCAGCCTGAATCTGAATGAGTTTTCCAAACTTGTATATTTAAATTTGGACCATTGCATGTTTTTGGAATCTTTGCCACAACTTCCTTTTCCTACTGCTATCAATTGGGATCTTGATGCTAACATAGGTCGTTTGAAAATGGGATTGCACATATTCAACTGTCCTAATTTGGGTGAGAGGGAATGTAGAATTGTATTTTCATGGATGAAACAATTCATTCAAGCAAATCCACAATGCCCTCATGTGATTGATATTGTTATTCCTGGAAGTGAAATACCAACTTGGTTCAATAATCAAAGCGAGGGTGATAAAATACTGATAGACAACTCTCCCATTAAGCATGACATTAACAATCATATCATTGGCTTTCTATGTTGTTCACTATTTTCTGTGGAACCTATTGATTATCCAATTGAAATCAGGATTATACTTCAGTTAACTGGTTTTTACTTAGATGGTCCAGTGGACAAGTTTCCTCCGCGAGATCATCAAAATCATCTTCCCATAGTTTACCGAGATCTTATTAAGGTCAAGACAAATCACATTTGGCTAACCTATTTCCCCCGGAAGTTGTCCTGGTATGTTCCGGATTTTCATGGCACAATGGATGTTAAATTTGATAACTATGATTTTTGTGGGATTAGAAATGAGGTGAAGAACTGCGGATATGGCTGGCTGCATAAACAGGATATACAAGAGTTCAACGTAACAACGATGCATCCTGGAAACTCCTCAGCTCTGAAGCGCAAGTTTTTGGCAATAGAAGGCATTCATTCATCTGATTAA 3177 0.3664 MASCNNSSALALVTLPNKRNNYEVFVTFRGEDTRYSFTDFLFNALEDKGVSVFRDNTNLPKGESIGPELLCAIEDSQVFTVIFSKNYASSTWCLQELEKICECIQVSGKHILPVFYDVDPSEVRKQSGIYGEAFVEHERRFQQDYEMVQRWRKALTQVGTISGWDVRHKPQSTQIKEIVQRIMNILDCKPSCVSKDLVGMNSPIQELQNHLHLNSVDDVRAIGIWGMGGIGKTTLASALYGRVSNQFDACCFIDDVSKVYRSPDGPLGVQKQILHKTLGKEHNQIWNNHDAINLMQRRLGRVRTLLILDNVDHVKQLEIIPVNREWLGTGSRIIIISRDEHILKKYGVDVVYKVPLLNFTNSLELFCRQAFKLDHILNSYEGLVSSILHYTNGLPLAIEVLGSFLYDRNISEWRSALSRLRESPDKDIMDVLQISFDGLDKAEKEIFLHIACFFNSVDADYVKNVLNCCGFHADIGLRVLIDKSLIRIIDEHIRMHNLLEELGRKIVQENSSKELRKWKRLWSKEQFHHVMSDHMEKNVEAIVLKNDVRVEEEMMMAAMMVKYFSNLRLLIIKMDSVAPDSVALRSLTCLSSELRYVEWANYPFMYLPSSFQPIQLFDLILFQSSIKHLWKDKKYLPNLRHLCLSYSYNLIEIPNFEEFPNLEQLNLAGCIKLVKLDPSIGLLRKIVYLNLGRCESLKSIPNTIFGMNSLKYINMSGCFKLSFNNQRASHSQSTSPSLNVLHRYIFPFFPLPDYAGWLYCMSEIDISFCGLSQVPDAIGCLRQLQSLNLGGNYFVSLISLNLNEFSKLVYLNLDHCMFLESLPQLPFPTAINWDLDANIGRLKMGLHIFNCPNLGERECRIVFSWMKQFIQANPQCPHVIDIVIPGSEIPTWFNNQSEGDKILIDNSPIKHDINNHIIGFLCCSLFSVEPIDYPIEIRIILQLTGFYLDGPVDKFPPRDHQNHLPIVYRDLIKVKTNHIWLTYFPRKLSWYVPDFHGTMDVKFDNYDFCGIRNEVKNCGYGWLHKQDIQEFNVTTMHPGNSSALKRKFLAIEGIHSSD 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02179 1058 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Trre7g02179 1058 SUPERFAMILY L domain-like 581 856 - -
Trre7g02179 1058 Gene3D - 16 184 IPR035897 -
Trre7g02179 1058 Pfam Leucine Rich repeats (2 copies) 637 678 IPR025875 -
Trre7g02179 1058 SUPERFAMILY "Winged helix" DNA-binding domain 427 531 IPR036390 -
Trre7g02179 1058 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 164 IPR035897 -
Trre7g02179 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 450 IPR027417 -
Trre7g02179 1058 Pfam C-JID domain 884 1028 IPR045344 -
Trre7g02179 1058 Gene3D - 185 351 IPR027417 -
Trre7g02179 1058 Pfam NB-ARC domain 203 425 IPR002182 GO:0043531
Trre7g02179 1058 Pfam TIR domain 21 186 IPR000157 GO:0007165
Trre7g02179 1058 Gene3D Ribonuclease Inhibitor 742 875 IPR032675 -
Trre7g02179 1058 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
Trre7g02179 1058 SMART till_3 21 161 IPR000157 GO:0007165
Trre7g02179 1058 Gene3D Ribonuclease Inhibitor 508 741 IPR032675 -
Trre7g02179 1058 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 837 IPR044974 GO:0006952
Trre7g02179 1058 Gene3D - 357 440 IPR042197 -
Trre7g02179 1058 PRINTS Disease resistance protein signature 657 673 - -
Trre7g02179 1058 PRINTS Disease resistance protein signature 298 312 - -
Trre7g02179 1058 PRINTS Disease resistance protein signature 221 236 - -
Trre7g02179 1058 PRINTS Disease resistance protein signature 391 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02179 Trre-Chr7 17326655 17330282 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02179 21 852 WRKY Transcription Factor Family AT4G12020 29.017 8.29e-80 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02179 - - mtr:11446628 1174.84