Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02171 ATGGCTGACAGCAGCAACTCCTCTTCTTCAGCTCTGGTGACATTGCCAAAAAAGAGAAACAATTATGATGTGTTTGTCACTTTCAGAGGCGAAGACACTCGCTACAATTTCACTGATTTTCTTTTTAGTGCCCTCGAAGATAAACGTGTTTCTGTATTTAGGGATGACACTAATCTTCCAAAAGGTGACACCATTGGACCCGAACTCCTTTGTGCAATCGAAGACTCTCAGATTTTCGTTGTCATCTTCTCAAAGAATTATGCTTCCTCAACTTGGTGCTTGCGTGAATTGGAAAAGATATGTGAATGTGTTCAAGTGTCTGGAAAACATGTTTTGCCTGTTTTCTATGATGTTGATCCTTCTGAGGTGCGAAAGCAAAGTGGGATTTATGGTGAAGCCTTTGTCAAACATGAACAAAGATTCCAACAAGACTATGAGATATCGATGGTGCAAAGATGGAGGAAAGCTCTCACACAAGTGGGAACAATCTCTGGTTGGGATGTGCGTCATAAGCCACAATCTGCACAGATTAAAGAGATTGTTCAAAGAATAATAGATATTCTGGGTTGCAAATCTTCATATGTTTCAAAAGATTTAGTTGGGATGAATTCTCCTATACAAGAATTACAAATCTTCATGAACTCTGGTGATGATGTTCGGGCTATAGGTATTTGTGGAATGGGAGGAATAGGGAAGACAACCCTTGCCAGTGCTTTGTATGGTAGAGTCTCTAATCAATTTGATGCATGCTGTTATATTGATGATGTTAGCAAAGTTTATAGATCACATGATGGTCCACTTGGTGTACAAAAACAAATTCTACATCAAACACTCGGCAAAGAACACAATCAGATATGGAATAATCATGACGCAATTAATCTGATGCAACGTAGACTAGGTCTTGTAAGGACCCTTCTTATTCTTGATAATGTTGATCATGTTAAGCAACTAGAAATAATACCGGTGAATCGTGAATGGTTAGGCGCAGGTAGTAGGATCATTATCATTTCTAGAGATGAACATGTCCTCAAAAAGTATGGAGTGGATGTTTTTTACAATGTTCCACTCTTGAATAAGACTAACTCTCTAGAATTATTTTGCCGACAAGCTTTCAAACTTGATCATATTTTGAATAGTTATGAAGGGCTGGTTAGTAGCATATTGCATTATACCAATGGCCTACCACTTGCAATTAAAGTGTTGGGCTCATTTTTATATGATCGAAATATCTCTGAATGGGAAAGTGCATTGTCTAGATTGAGAGAAATTCCAGACAAAGATATCATGGATGTGCTACAAATAAGTTTTGATGGGCTAGACAAGGAGGAAAAAGAAATATTTCTTCACATTGCTTGTTTTTTTAACGGTGACGGCGAGGTTTATGTTAAAAATATTCTAAGTTGTTGTGAATTTCATGCTGATATTGGATTGAGAATTCTCATTGATAAATCACTTATAAGAATTGAGTCTGGTGATATTATAATGCATAATTTATTGGAAGAGCTAGGTAGAAAAATTGTCCAAGAAAGTTCAAGCGAAGAGTCAAGAAAGTGGAAAAGGTTGTGGCTTAAGAAACAATTCCACGATGTTATGTCGGACCATATGGAAAAGAATGTGGAAGCCATCGTTTTGCAGCATGATTTTAGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGATGATGATGGATGCAGTAATGATTGAATACTTTTCAAATCTTAAATTGCTCATCATCTCGCAAAAGATGGAATATGTGAATTCATCTGAAAGCCTCAGTTGTCTTTCTAACAAATTAAGATATGTTGAATGGTTTCATTATCCATTCATGTATTTGCCATCAAGTTTTCAGCCCATTCAACTTGTTGAGTTGATATTGGATGGTAGTAGCATCAAACAACTATGGAAAGACAAAAAGTATCTGCCCAATTTGAGACATTTGGATATATCCTGTTCCTATAATCTAATAGAGATACCAAATTTTGAAGAGTTTCCGAATCTCGAGAAGTTAAATCTGGAAGGATGTTCAAGCCTTGTGAAGTTGGATCCTTCTATTGGACTTCTAAGTAAGCTTTTTTACTTGAATTTGGAATGGTGCAAAAGTCTAATAAGCATACCAAACACCATATTTGGGATCAACTCTCTTAAATACATAAACATGAACCACTGTTACAAAGTCTCGTTTAACAACAATCCCGGGCATATGAATATAATTAAAAGGGCATCGCAGTCAACTTCTCCATCTTCAAATGTACCACCACACCGCATTATCATTGCTCATTCCCTTTCATCAAGGGAAGAATGGTTATATTCTTTGAATGAAATTGATATCAGTTATTGTGGTCTACGCCAACTCCCTGATGCAATTGGATGCCTAAGTCAGCTACAAAGTTTAAATCTTGAGGGAAACAGTTTTGTATCACTACCCAGCCTCAATGAGCTTTTCAAACTTGTATATTTAAACTTGAATGATTGCATATTTTTGGAATATTTGCCTCAACTTCCTTTTCCTACTGCTGCCAATAGGGATCTTCCCATTCGTAAAATAGGATTGCACATGCTCAGATGTCCTAAATTGGGTGAGAGGGAACTTAGAATTGCATTTTCTTGGATGACAAAATTGATTCAAGCAAACCCACAATTCTCTGGATTGATTGAGATTATTGTTCCTGGAAATGAAATACCAAGTTGGTTTATGAATCAAAGCGTGGGTGGTAGAATACTTTTTGTACAAAGCGTGGGTGGTAGAATACGGGTAGACAACTCTCCCATTAAACATGACATTAACAATGATATCATTGGCCTTCTATGTTGTTCACTAAAAAAAAATTCGATTGAGATAACCTATTTCCCCCGGAAGTGGTCCCAGAAAGTTTGGGCCTATAGATATGAGACGATTAGGACATATGATCTTCAATTCAGGTATCCTCCTTGGGTGCATACCCATGAGAAGATTTGCGGATATGGCTGGGTACATAAACAGGATCTACAAGAGTTTAACTTCATGCATCCTGGAAACTCGTCAGCTCTGAAGCACAAGTTTTTGGCAATAGAAGACATTCATTCATCTGATTAA 3108 0.3758 MADSSNSSSSALVTLPKKRNNYDVFVTFRGEDTRYNFTDFLFSALEDKRVSVFRDDTNLPKGDTIGPELLCAIEDSQIFVVIFSKNYASSTWCLRELEKICECVQVSGKHVLPVFYDVDPSEVRKQSGIYGEAFVKHEQRFQQDYEISMVQRWRKALTQVGTISGWDVRHKPQSAQIKEIVQRIIDILGCKSSYVSKDLVGMNSPIQELQIFMNSGDDVRAIGICGMGGIGKTTLASALYGRVSNQFDACCYIDDVSKVYRSHDGPLGVQKQILHQTLGKEHNQIWNNHDAINLMQRRLGLVRTLLILDNVDHVKQLEIIPVNREWLGAGSRIIIISRDEHVLKKYGVDVFYNVPLLNKTNSLELFCRQAFKLDHILNSYEGLVSSILHYTNGLPLAIKVLGSFLYDRNISEWESALSRLREIPDKDIMDVLQISFDGLDKEEKEIFLHIACFFNGDGEVYVKNILSCCEFHADIGLRILIDKSLIRIESGDIIMHNLLEELGRKIVQESSSEESRKWKRLWLKKQFHDVMSDHMEKNVEAIVLQHDFRGGEGGGGGGGGGGGGGGGGGGEMMMDAVMIEYFSNLKLLIISQKMEYVNSSESLSCLSNKLRYVEWFHYPFMYLPSSFQPIQLVELILDGSSIKQLWKDKKYLPNLRHLDISCSYNLIEIPNFEEFPNLEKLNLEGCSSLVKLDPSIGLLSKLFYLNLEWCKSLISIPNTIFGINSLKYINMNHCYKVSFNNNPGHMNIIKRASQSTSPSSNVPPHRIIIAHSLSSREEWLYSLNEIDISYCGLRQLPDAIGCLSQLQSLNLEGNSFVSLPSLNELFKLVYLNLNDCIFLEYLPQLPFPTAANRDLPIRKIGLHMLRCPKLGERELRIAFSWMTKLIQANPQFSGLIEIIVPGNEIPSWFMNQSVGGRILFVQSVGGRIRVDNSPIKHDINNDIIGLLCCSLKKNSIEITYFPRKWSQKVWAYRYETIRTYDLQFRYPPWVHTHEKICGYGWVHKQDLQEFNFMHPGNSSALKHKFLAIEDIHSSD 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02171 1035 Gene3D - 195 350 IPR027417 -
Trre7g02171 1035 Pfam NB-ARC domain 213 422 IPR002182 GO:0043531
Trre7g02171 1035 Gene3D - 16 194 IPR035897 -
Trre7g02171 1035 ProSiteProfiles TIR domain profile. 20 188 IPR000157 GO:0007165
Trre7g02171 1035 Gene3D - 356 440 IPR042197 -
Trre7g02171 1035 SMART till_3 21 163 IPR000157 GO:0007165
Trre7g02171 1035 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 189 - -
Trre7g02171 1035 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 860 IPR044974 GO:0006952
Trre7g02171 1035 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 166 IPR035897 -
Trre7g02171 1035 SUPERFAMILY L domain-like 495 844 - -
Trre7g02171 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 450 IPR027417 -
Trre7g02171 1035 Gene3D Ribonuclease Inhibitor 754 911 IPR032675 -
Trre7g02171 1035 Gene3D Ribonuclease Inhibitor 575 753 IPR032675 -
Trre7g02171 1035 PRINTS Disease resistance protein signature 298 312 - -
Trre7g02171 1035 PRINTS Disease resistance protein signature 391 405 - -
Trre7g02171 1035 PRINTS Disease resistance protein signature 221 236 - -
Trre7g02171 1035 PRINTS Disease resistance protein signature 673 689 - -
Trre7g02171 1035 ProSiteProfiles Leucine-rich repeat profile. 805 826 IPR001611 GO:0005515
Trre7g02171 1035 Pfam TIR domain 21 190 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02171 Trre-Chr7 17270915 17276470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02171 21 885 WRKY Transcription Factor Family AT4G12020 27.508 5.86e-72 260