Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02168 ATGGCTAGTAGCAGCAACTCCTCTGCCTTAGCTCTGGTGACATTGCCAAATAAGAGGAAGAATTATGAAGTGTTTGTCACCTTCAGAGGTGAAGACACTCGCTACAATTTCACTGATTTTCTTTTTAATGCCCTGGAAGATAAAGGAGTTTCTGTATTCAGGGATAACACTAATCTTCCAAAAGGTGAATCCATTGGACCCGAACTCCTTCGTGCAATCGAAGACTCTCCAGTTTTCGCTGTCATCTTCTCAAAGAATTATGCTTCCTCAACTTGGTGCTTGCAAGAATTGGAAAAGATATGTGAATGTATTCAAGTGTCTGGAAAACATATTTTGCCCGTTTTCTATGATGTTGCTCCTTCTGAGGTGCGAAAGCAAAGTGGGATTTATGGTGAAGCCTTTGTCGAACATGAACGAAGATTCCAACAAGACTATGAGAAGGTGCAAAGATGGAGGAAAGCTCTCACACAAGTGGGAACAGTCTCTGGTTGGGATGTGCGTCATAAGCCACAATCGGCACAGATTAAAGAGATTGTTCAAAGAATAATCAATATTTTGGATTGCAAACCTTCATGTGTTTCAAAAGATTTAGTTGGGATGAATTCTCCTATACAAGAATTACAAAATCATTTACATTTAAACTCTGTCGATGATGTTCGGGCTATAGGAATTTGTGGCATGGGAGGAATAGGGAAGACAACCCTTGCCAGTGCTTTGTATGGTAGAGTCTCTAATCAATTTGATGCATGCTGTTTTATTGATGATGTTAGCAAAGTTTATAGAGCACATGATGGTCCACTTGGTGCACAAAAACAAATTCTACATCAAACAGTCGGCAAAAAGCACAATCAGATATGCAATAATCATGATGCAATTAATCTGATGCAACGTAGACTAGGTCGTGTAAGGACCCTTCTAATTCTTGATAATATTGATCATGTTAAGCAACTAGAAATAATACCTGTGAATCATGAATGGTTAGGCACAGGTAGTAGAATCATTATCATTTCTAGAGATGAACATATCTTGAAAAAGTATGGAGTGGATGTTGTTTACAAAGTTCCACTCCTGAATTTCTCTAACTCTCTAGAATTATTCTGCAGACAAGCTTTCAAACTTGATCATATTTTGAATAGTTATGAAGGGTTGATTAGTAGCATATTGCATTATACCAATGGCCTACCACTTGCAATTGAAGTATTGGGCTCATTTTTATATGACCTAAATATTTCTGAATGGAAAAGTGCATTGTCTAGATTGAGAGAAAGTCCAGACAAAGATGTCATGGATGTGCTACAAATAAGTTTTGAAGGGCTAGATAAGGCGGAAAAAGAAATATTTCTTCACATTGCTTGCTTTTTTAACTCTGTTGATGCAGATTATGTAAAAAATGTTCTAAATTGTTGTGGATTTCATGCTGATATTGGACTGAGAGTTCTCATTGATAAATCACTTATAAGAATTATAGATGAACATATTAGAATGCATAATTTACTGGAAGAGCTTGGCAGAAAAATTGTCCAAGAAAATTCAAGCAAAGAGTTAAGAAAGTGGAAAAGATTGTGGTCTAAGGAACAATTTCATCATGTTATGTCGGACCATATGGAAAACAATGTTGAAGCCATAGTTTTGAAGAATGATGTTAGAGTAGAAGAAGAGATGATGATGGCTGCAATGATGGTTAAATACTTTTCAAATCTTAGATTGCTAATCATCAAGATGGATAGTGTCGCACCGGATAGTGTGGCATTAAGAAGTCTCACTTGTCTTTCTAGCAAATTAAGATATGTTGAATGGGCGAATTATCCATTCATGTATTTGCCATCAAGTTTTCAGCCCATTCAACTTGTTGAGTTGATATTGTTTCAAAGTAGCATCAAACATTTATGGAAAGACAAAAAGTATCTGCCCAATTTGAGACATTTGTGTCTATCCTATTCCTATAATCTAATAGAGATACCAAATTTTGAGGAGTTCCCAAATCTAGAGCAGTTAAATCTGGCAGGATGTATAAAACTTGTGAAGTTGGATCCTTCTATTGGACTTCTAAGAAAGATTGTTTACTTGAATTTGGGAAGGTGTGAAAGTCTAATAAGCATACCCAACACCATATTTGGGATGAACTCACTTAAATATATAAACATGAGTGGCTGTTTCAAATTGTCGTTTAACAATCAAAGGGCATCACATTCCCAGTCAACTTCCCCATCTTTAAATGTACCACACCGCTATATCTTTCCTTTTTTCCCACTCCCGGATTATGCAGGGTGGTTATATTGTATGAGTGAAATTGATATTAGTTTTTGTGGTCTAAGCCAAGTCCCTGATGCAATTGGATGCCTACGTCAGCTACAAAGTTTAAATCTTGGTGGAAACTATTTTGTGTCACTAATCAGCCTGAATCTGAATGAGTTTTCCAAACTTGTATATTTAAACTTGGACCATTGCATGTTTTTGGAATCTTTGCCACAACTTCCTTTTCTTACTGCTATCAATTGGGATCTTGATACTAACAGAGGTCGTTTGAAAATGGGATTGCACATATTCAACTGTCCTAATTTGGGTGAGAGGGAATGTAGAATTGTATTTTCATGGATGAAACAATTCATTCAAGCAAATCCACAATGCCCTCATGTGATTGATATTGTTATTCCTGGAAGTGAAATACCAACTTGGTTCAATAATCAAAGCGAGGGTGATAAAATACTGATAGACAACTCTCCCATTAAGCATGACATTAACAATGATATAATTGGCTTTCTATGTTGTTCACTATTTTCTGTGGAGCCTATTGATTATCCAATTGAAATCAGGATTATACTTCAGTTAACTGGTTTTTACTTAGATGGTCCAGTGGACAAGTTTCCTCCGCGAGATCATCAAAATCATCTTCCCATAGTTTACCGAGATCTTATTAAGGTCAAAACAAATCACATTTGGCTAACCTATTTCCCCCGGAAGTTGTCCTGGTATGTTCCGGACTTTCATGGCACAATGGATGTTAAATTTGATAACTATGATTTTTGTGGGATTAGAAATGAGGTGAAGAACTGCGGATATGGCTGGCTGCATAAACAGGATATACAAGAGTTCAACGTAACAACGATGCATCCTGGAAACTCCTCAGCTCTGAAGCGCAAGTTTTTGGAAATAGAAGGCATTCATTCATCTGATTAA 3177 0.3664 MASSSNSSALALVTLPNKRKNYEVFVTFRGEDTRYNFTDFLFNALEDKGVSVFRDNTNLPKGESIGPELLRAIEDSPVFAVIFSKNYASSTWCLQELEKICECIQVSGKHILPVFYDVAPSEVRKQSGIYGEAFVEHERRFQQDYEKVQRWRKALTQVGTVSGWDVRHKPQSAQIKEIVQRIINILDCKPSCVSKDLVGMNSPIQELQNHLHLNSVDDVRAIGICGMGGIGKTTLASALYGRVSNQFDACCFIDDVSKVYRAHDGPLGAQKQILHQTVGKKHNQICNNHDAINLMQRRLGRVRTLLILDNIDHVKQLEIIPVNHEWLGTGSRIIIISRDEHILKKYGVDVVYKVPLLNFSNSLELFCRQAFKLDHILNSYEGLISSILHYTNGLPLAIEVLGSFLYDLNISEWKSALSRLRESPDKDVMDVLQISFEGLDKAEKEIFLHIACFFNSVDADYVKNVLNCCGFHADIGLRVLIDKSLIRIIDEHIRMHNLLEELGRKIVQENSSKELRKWKRLWSKEQFHHVMSDHMENNVEAIVLKNDVRVEEEMMMAAMMVKYFSNLRLLIIKMDSVAPDSVALRSLTCLSSKLRYVEWANYPFMYLPSSFQPIQLVELILFQSSIKHLWKDKKYLPNLRHLCLSYSYNLIEIPNFEEFPNLEQLNLAGCIKLVKLDPSIGLLRKIVYLNLGRCESLISIPNTIFGMNSLKYINMSGCFKLSFNNQRASHSQSTSPSLNVPHRYIFPFFPLPDYAGWLYCMSEIDISFCGLSQVPDAIGCLRQLQSLNLGGNYFVSLISLNLNEFSKLVYLNLDHCMFLESLPQLPFLTAINWDLDTNRGRLKMGLHIFNCPNLGERECRIVFSWMKQFIQANPQCPHVIDIVIPGSEIPTWFNNQSEGDKILIDNSPIKHDINNDIIGFLCCSLFSVEPIDYPIEIRIILQLTGFYLDGPVDKFPPRDHQNHLPIVYRDLIKVKTNHIWLTYFPRKLSWYVPDFHGTMDVKFDNYDFCGIRNEVKNCGYGWLHKQDIQEFNVTTMHPGNSSALKRKFLEIEGIHSSD 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02168 1058 Pfam C-JID domain 884 1028 IPR045344 -
Trre7g02168 1058 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 164 IPR035897 -
Trre7g02168 1058 PRINTS Disease resistance protein signature 221 236 - -
Trre7g02168 1058 PRINTS Disease resistance protein signature 298 312 - -
Trre7g02168 1058 PRINTS Disease resistance protein signature 657 673 - -
Trre7g02168 1058 PRINTS Disease resistance protein signature 391 405 - -
Trre7g02168 1058 Gene3D - 357 440 IPR042197 -
Trre7g02168 1058 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 834 IPR044974 GO:0006952
Trre7g02168 1058 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
Trre7g02168 1058 Gene3D - 16 188 IPR035897 -
Trre7g02168 1058 Pfam Leucine Rich repeats (2 copies) 637 678 IPR025875 -
Trre7g02168 1058 Gene3D Ribonuclease Inhibitor 560 735 IPR032675 -
Trre7g02168 1058 Gene3D Ribonuclease Inhibitor 748 869 IPR032675 -
Trre7g02168 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 450 IPR027417 -
Trre7g02168 1058 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Trre7g02168 1058 SMART till_3 21 161 IPR000157 GO:0007165
Trre7g02168 1058 SUPERFAMILY L domain-like 581 843 - -
Trre7g02168 1058 Pfam NB-ARC domain 203 426 IPR002182 GO:0043531
Trre7g02168 1058 Gene3D - 189 351 IPR027417 -
Trre7g02168 1058 Pfam TIR domain 21 188 IPR000157 GO:0007165
Trre7g02168 1058 SUPERFAMILY "Winged helix" DNA-binding domain 427 531 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02168 Trre-Chr7 17255318 17258966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02168 20 832 WRKY Transcription Factor Family AT4G12020 29.087 3.98e-78 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02168 - - mtr:11446628 1178.7