Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02161 ATGGGGAGCAATAGCATGTTTCGTTACGCAGATGGAGTCGATAAATTGTTGATGTTCTTCGGAACTCTAGGCAGCCTCGGCGATGGCCTGCAGAATCCTCTCATGATGTACATTCTTAGTGATGTGATCAATGCCTATGGCGACAAGAATAGCCGTATAACACAGCATGATGTGAACAAGTATGCATCCAGGCTATTATGTGTTGCAATTGGGGTTGGAATTTCAGCTTTTATTGAAGGAGTATGTTGGACAAGAACAGCTGAGAGACAGGCTTCAAGAATGAGAATGGAATACCTAAAATCAGTCTTAAGACAAGAAGTTGGTTTCTTTGACACTCAAACTGCTGGTTCTTCAACAACATACCAAGTTGTCTCGCTCATTTCCTCCGATGCAAATACAGTCCAATCTGCCTTGTCTGAGAAGATACCGGATTGCTTGACTTACATTTCGGCATTCTTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTGCATTGGCAGCAATACCACTCTCTGTCATGTTCATTGTCCCGGCACTTGTATTCGGGAAGATGATGTTGGATGTCACAATGAAAATGATAGAGTCTTATGGTGTTGCTGGTGGGATTGCAGAACAAGCAATATCTTCAATAAGAACTGTTTTCTCTTATGTTGGAGAGAACCAAACACTAAAAAGATTTAGTACTGCACTTCAAAAGACTATGGATCTTGGAATAAAGCAAGGTTTTGCAAAGGGGTTGATGTTAGGAAGCATGGGAGTTATTTATGTAAGTTGGGGTTTTCAAGCTTGGGTTGGAACTTTTTTGATATCCGAAAAAGGAGAGAAAGGTGGCCATGTATTTGTAGCTGGCTTCAATATCCTAATGGGAGGACTGAGCATTTTAAGTGCACTTCCAAATTTAACTGCCATCATGGAGGCCTCCACAGCGGTCACTCGCATTTTTGAAATGATTGATAGGGTGTCAACTATAGATTCTGAAGAGAAGAAAGGAAAGGCTTTATCACATGTGAGAGGAGAAATTGAATTTAAAGACATATACTTCTGTTATCCATCTAGGCCAGATTCACCGGTCTTGCAGGAATTCAATCTCATTATTCGAGCCGGCAAGAGGATAGGTCTTGTTGGGGGAAGTGGTTCAGGAAAATCAACTATAATTGCACTGCTTGAAAGGTTTTATGACCCTGTTGAAGGAGAAATATTATTGGATGGTCACAAGATTAATAAACTTCAATTGAAATGGTTGAGATCTAATCTTGGCCTAGTGAATCAAGAGCCTGTTCTTTTCGCCACATCCATAAAAGAGAATATCTTATTTGGAAAAGAAGGTGCTTCGATGGAAAGTGTGATCGGTGCAGCTAAAGCATCAAATGCACATGACTTCATTGTCAAGTTACCAGATGGTTATGAAACGCAAGTTGGACAGTTTGGATTTCAATTGTCTGGTGGACAGAAGCAGCGAATCGCCATAGCTAGAGCTTTACTAAGGGATCCAAAGGTTCTCCTTCTTGATGAAGCAACAAGTGCACTGGATGCTCAATCCGAAAGAGTTGTACAAGAAGCGATCGATCAAGCTTCAAAAGGAAGAACAACAATCATCATTGCTCATCGCCTTTCTACAATAAGAACGGCTGACACTATTGCTGTGCTTCAAGCAGGGAGAGTGATTGAATCAGGTAGTCATAATGAGCTCATGGAAAAAAACGGCGGACAAGGAGGAGAGTACGCACGTATGGTTGAGTTGCAACAAGTAACAACTCAAAATGATGAATCTGTACATTCCAATCCTCAATCAGAGGGAAAGAGATCTCATAGGATGAATAGGAGTGTTCCACAAAGTCCAGGAGTAAGTTTCAAATCAAGCACACCAGGCACTCCAATGTTGTATCCCTTCAGCCAGGGATTTTCCATCGGCACGCCTTACTCGTATTCCATCCAATATGACCATGATGACGATGATAGTTTTGAAGATGATTTGAAAAGACCAAACCATCCAGCTCCTTCACAGTGGCGCTTGCTGAAAATGAATGCGCCTGAGTGGGGAAGAGGAGTGTTAGGAATATTGGGAGCATTAGGCTCAGGAGCAGTACAACCAGTAAATGCATACTGTGTTGGATTACTCATATCAATTTATTTTGAACCTGATACCTCTAAGATGAAGTCTAAAGCTAGAGTCTTAGCCCTCGTTTTCTTAGGAATTGGTGTTTTTAACTTCTTCACTAGTATGCTCCAACACTACAATTTTGCTGTCATGGGAGAAAGGTTAACGAAAAGAGTACGAGAGAAAATACTCGAAAAATTGATGAGTTTTGAGATAGGATGGTTTGATCATGAAGACAACACAAGTGCAGCCATTTGTGCGAGATTAGCCTCCGAAGCGAACTTGGTTCGTTCCCTTGTCGGGGACAGGATGTCTCTTCTGGCTCAAGCGATATTTGGATCCGTCTTTGCCTACACTGCAGGACTTGTTCTCTCATGGAGGCTTTCTATTGTGATGATTGCAGTACAACCATTAGTCATTGGAAGCTTTTATGCAAGAAGTGTTTTGATGAAGACTATGGCGGAAAAAACTCGTAAAGCACAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTTATAAACCATAGAACCATAACTGCATTTAGTTCGCAGAAAAGAATGTTGGCACTCTTCAAATCTACAATGACAGGACCTAAACAGGAGAGTATTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGCTCACAATTTTTCAACACCGGATCAACTGCATTAGCATACTGGTATGGCGGGAGGCTCCTGATACACGGACTTATAGAACCGACGGAACTCTTTCAAGCATTTTTAATATTACTCTTCACTGCATACATCATTTCAGAAGCCGGAAGCATGACTTCTGATATATCTAAAGGAAGCAATGCAGTTGGATCCGTTTTCGCTATCCTAGACAGGAAAAGTGAGATTGATCCGGAAACCGTATGGGGATCAGATAAAAAAAGGAAAATTAGAGGCAGGGTGGAGCTTAAAAATGTCTTCTTTTCCTATCCAAGTAGACCCGATCAAATGGTATTCCAAGGTCTGAATCTCAAAGTTGAGGCTGGACGAACGGTAGCACTTGTGGGGCACAGTGGTTGCGGTAAATCCACTATCATTGGTCTTATTGAAAGGTTTTATGATCCTATCAAGGGAATGGTTTGCATAGATGAACAAGACATCAAGACCTATAACTTAAGAATGTTGAGGTCACATATCGCATTGGTAAGTCAGGAACCAACCCTTTTTAGTGGAACCATTCGAGAAAACATCGCCTATGGAAAAGAAAACGCAACTGAATCCGAGATAAGAAAGGCTGCTACTGTTGCTAATGCTCATGAATTCATAAGCGGAATGAATGAAGGGTATGAAACACATTGTGGAGAAAGAGGAGTTCAGTTATCAGGAGGACAGAAACAAAGAATAGCATTAGCAAGAGCTATACTTAAGAATCCAGCAATTCTTCTTCTGGATGAAGCTACAAGTGCACTTGATAGTGCATCAGAGGTTTTAGTCCAAGAAGCACTTGAGAAAATAATGGTTGGAAGAACATGTATAGCAGTGGCACATAGGTTATCTACAATACAGAAATCAAACTCCATTGCTGTGATTAAGAATGGTAAAGTTGTGGAACAAGGTTCACATAATGAATTGATTTCTCTTGGAAGAAATGGAGCTTATTATTCTCTTGTTAAACTTCAACGTGGTACCTCCCCCCCTAGATGA 3768 0.4114 MGSNSMFRYADGVDKLLMFFGTLGSLGDGLQNPLMMYILSDVINAYGDKNSRITQHDVNKYASRLLCVAIGVGISAFIEGVCWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTAGSSTTYQVVSLISSDANTVQSALSEKIPDCLTYISAFLFCHIFAFVLSWRLALAAIPLSVMFIVPALVFGKMMLDVTMKMIESYGVAGGIAEQAISSIRTVFSYVGENQTLKRFSTALQKTMDLGIKQGFAKGLMLGSMGVIYVSWGFQAWVGTFLISEKGEKGGHVFVAGFNILMGGLSILSALPNLTAIMEASTAVTRIFEMIDRVSTIDSEEKKGKALSHVRGEIEFKDIYFCYPSRPDSPVLQEFNLIIRAGKRIGLVGGSGSGKSTIIALLERFYDPVEGEILLDGHKINKLQLKWLRSNLGLVNQEPVLFATSIKENILFGKEGASMESVIGAAKASNAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQEAIDQASKGRTTIIIAHRLSTIRTADTIAVLQAGRVIESGSHNELMEKNGGQGGEYARMVELQQVTTQNDESVHSNPQSEGKRSHRMNRSVPQSPGVSFKSSTPGTPMLYPFSQGFSIGTPYSYSIQYDHDDDDSFEDDLKRPNHPAPSQWRLLKMNAPEWGRGVLGILGALGSGAVQPVNAYCVGLLISIYFEPDTSKMKSKARVLALVFLGIGVFNFFTSMLQHYNFAVMGERLTKRVREKILEKLMSFEIGWFDHEDNTSAAICARLASEANLVRSLVGDRMSLLAQAIFGSVFAYTAGLVLSWRLSIVMIAVQPLVIGSFYARSVLMKTMAEKTRKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMTGPKQESIRQSWISGFGLFSSQFFNTGSTALAYWYGGRLLIHGLIEPTELFQAFLILLFTAYIISEAGSMTSDISKGSNAVGSVFAILDRKSEIDPETVWGSDKKRKIRGRVELKNVFFSYPSRPDQMVFQGLNLKVEAGRTVALVGHSGCGKSTIIGLIERFYDPIKGMVCIDEQDIKTYNLRMLRSHIALVSQEPTLFSGTIRENIAYGKENATESEIRKAATVANAHEFISGMNEGYETHCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSASEVLVQEALEKIMVGRTCIAVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGRNGAYYSLVKLQRGTSPPR 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02161 1255 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524|GO:0016887
Trre7g02161 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1245 IPR003439 GO:0005524
Trre7g02161 1255 Pfam ABC transporter 1028 1176 IPR003439 GO:0005524
Trre7g02161 1255 MobiDBLite consensus disorder prediction 587 625 - -
Trre7g02161 1255 FunFam Putative ABC transporter B family member 8 650 996 - -
Trre7g02161 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre7g02161 1255 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Trre7g02161 1255 SUPERFAMILY ABC transporter transmembrane region 7 321 IPR036640 GO:0005524|GO:0016020
Trre7g02161 1255 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Trre7g02161 1255 SMART AAA_5 1036 1228 IPR003593 GO:0016887
Trre7g02161 1255 SMART AAA_5 370 556 IPR003593 GO:0016887
Trre7g02161 1255 FunFam ABC transporter B family member 4 999 1252 - -
Trre7g02161 1255 FunFam ABC transporter B family member 19 333 585 - -
Trre7g02161 1255 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Trre7g02161 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Trre7g02161 1255 PANTHER ABC TRANSPORTER B FAMILY 5 744 IPR039421 -
Trre7g02161 1255 SUPERFAMILY ABC transporter transmembrane region 672 992 IPR036640 GO:0005524|GO:0016020
Trre7g02161 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1248 IPR027417 -
Trre7g02161 1255 CDD ABC_MTABC3_MDL1_MDL2 1009 1248 - -
Trre7g02161 1255 Gene3D ABC transporter type 1, transmembrane domain 653 995 IPR036640 GO:0005524|GO:0016020
Trre7g02161 1255 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Trre7g02161 1255 FunFam ABC transporter B family member 15-like 6 343 - -
Trre7g02161 1255 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524|GO:0016887
Trre7g02161 1255 Gene3D ABC transporter type 1, transmembrane domain 5 592 IPR036640 GO:0005524|GO:0016020
Trre7g02161 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre7g02161 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 584 IPR027417 -
Trre7g02161 1255 Gene3D - 333 585 IPR027417 -
Trre7g02161 1255 MobiDBLite consensus disorder prediction 609 625 - -
Trre7g02161 1255 Gene3D - 996 1252 IPR027417 -
Trre7g02161 1255 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre7g02161 1255 Pfam ABC transporter transmembrane region 687 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02161 Trre-Chr7 17193626 17199306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02161 6 1251 Calmodulin-binding Proteins AT2G36910 43.555 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02161 K05658 - gmx:100788127 2167.12