Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02160 ATGTTTGGATTTGAGTGTTCTTCTCCGGCCACCGCACACAAAATGGATTCTCAAATCAAGCATGCTGTTGTTGAAAAAGTTATCGGCCGTACGGGTTCTAGAGGACAGGTGACTCAAGTTAGAGTGAAGTTTATAGATGACAGTAACCGTCACATCATGAGGAATGTGAAAGGACCAGTTAGAGAAGGAGATACTCTCACTCTACTTGAGTCTGAAAGAGAAGCAAGAAGTGTATCAAGTATCATAGGTTGCACTACATTCATCACAAAAGAAACCCTCTGTGGGAGCACAGGACCTATTGTAGACATAGACATTCCTGAAACTACTAGATCCCAAACAGTTGATATCATGGGTTGTAACAAGGGAACAAACCAATGTGGCTTCAGAAGCCAATCTTCCACAATTGAATGCACTTTGTTATTGTCGTGGTCAAACAATCTTATCTCAGAAGTATAA 456 0.4101 MFGFECSSPATAHKMDSQIKHAVVEKVIGRTGSRGQVTQVRVKFIDDSNRHIMRNVKGPVREGDTLTLLESEREARSVSSIIGCTTFITKETLCGSTGPIVDIDIPETTRSQTVDIMGCNKGTNQCGFRSQSSTIECTLLLSWSNNLISEV 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02160 151 PANTHER 40S RIBOSOMAL PROTEIN S28 15 77 IPR000289 GO:0003735|GO:0005840|GO:0006412
Trre7g02160 151 SUPERFAMILY Nucleic acid-binding proteins 15 79 IPR012340 -
Trre7g02160 151 CDD S1_S28E 20 76 IPR000289 GO:0003735|GO:0005840|GO:0006412
Trre7g02160 151 Gene3D - 12 78 IPR012340 -
Trre7g02160 151 Pfam Ribosomal protein S28e 18 77 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02160 Trre-Chr7 17190033 17193449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02160 15 78 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 85.938 1.29e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02160 K02979 - egr:104443388 113.235