Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02117 ATGAGCCGAAACATGAACAATTTCACGCCTTTACCGGGGCTTTGGAGAACAACAGGTTCTAGAGCCTATGGTGATGCTTCTCACAATTCCAATAATAGTCATGAATTCAATGAAGTTCCTGTGTTTTACAGATCTCATCACTCTACTAGGGCCAATGATGAGAGGAGTTCAGGTGCACAAGATCCGCTGGGGTTGTGGGAAGTCAGAAGAACTCCTACAGAACATTACAGGATACCCAGTTTTCCAGCACAACCACCTAGAAGACAACAAACTTATGTTCAAAATGAGGACATGAGAAGGGGTTTCAATTTCAACCCAACCAGACTTAGACAGATTTTTCAACATTCACCTTCAAGATCAACATCAACAGAACAAACAACCATACAAGTTCCACAATTAGTAGAAAATTCAAAATCAACTATTTTAAGCAAGTTAAGGAAAATAGTCTATGATCCTACACCGAAGCGGTTAGCTAGAAGAGTGAGCTTATATTATAGAGGAAATGCTGCAAATGGTTTGAAAGATAGTGTGAAAGAAAATAAGGAAGATGGTATGAGATGTTCTATTTGCTTGGAAGATTTTGAGGCCAAAGAAGAAGTGATGCTTACTCCATGCAACCACATGTTTCATGAGGATTGTATTGTTACTTGGTTAACAAGTAAAGGTCAGTGTCCAGTTTGTAGGTTTGTGGTTTTTGAGGGAGTGAAGGAAAATTCTTCATCTTTTAATAGAAATGATATTACCAATTTGGAACCCAGTGACATGATCTCTGGAGAGCTTTTGTCAATTTTGAGGGCTATGGAAGAAGCATTTCAATTAGAACCTGCAAATTACTGA 837 0.3847 MSRNMNNFTPLPGLWRTTGSRAYGDASHNSNNSHEFNEVPVFYRSHHSTRANDERSSGAQDPLGLWEVRRTPTEHYRIPSFPAQPPRRQQTYVQNEDMRRGFNFNPTRLRQIFQHSPSRSTSTEQTTIQVPQLVENSKSTILSKLRKIVYDPTPKRLARRVSLYYRGNAANGLKDSVKENKEDGMRCSICLEDFEAKEEVMLTPCNHMFHEDCIVTWLTSKGQCPVCRFVVFEGVKENSSSFNRNDITNLEPSDMISGELLSILRAMEEAFQLEPANY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02117 278 SMART ring_2 187 227 IPR001841 -
Trre7g02117 278 SUPERFAMILY RING/U-box 180 234 - -
Trre7g02117 278 CDD RING-H2_SIS3 185 231 - -
Trre7g02117 278 Pfam Ring finger domain 186 228 IPR001841 -
Trre7g02117 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 243 IPR013083 -
Trre7g02117 278 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Trre7g02117 278 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 62 229 - -
Trre7g02117 278 SMART ringv_2 186 228 IPR011016 GO:0008270
Trre7g02117 278 FunFam RING/U-box superfamily protein 171 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02117 Trre-Chr7 16805304 16806942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02117 136 271 C3H Transcription Factor Family AT3G58720 50.704 2.45e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02117 - - psat:127107286 449.129