Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02096 ATGACTAGCAGAAGCAACCACTCTTCTTCAACTTTGGTAACATTGCCAATGAAGAAGAATCATTATGATGTGTTTGTGAGTTTCAGAGGTAAAGATACTCGCTTCAATTTCACCGATCATCTTCTTGCTGCTCTTCAAAGAAAAGGTATTTTTGCATTCAAAGATGACACTAAGCTTCAAAAAGGTGAATCCATAGCACCTGAACTATTTAATGCAATTCAAACCTCTCAGGTTTTCATTGTTGTTTTCTCAAAAAACTATGCTTCTTCAACTTGGTGCTTGCAAGAATTAGACAAGATTCTTGAATTTAGTCAATTATATGGAAAACGTGTTCTTCCTGTTTTCTATGATGTTGATCCTTCTGAGGTGAGACATCAAAAAGGTAGTTATGGTGAAGCATTTTCCAAACATGAACAAAGATTCCAACATGACACTCAGATGGTGCAAAGATGGAGGGAAGCTTTAATGCAGGTTGCCAATCTCTCTGGTTGGGATATGCGTCATAAATCACAATATGCAGAGATTGAAAAGATTATCGAAGAGGTAAAAAACATATTGGGGAACAAATTTTCAAGTCTTCCAAAAGGTTTAGTTGGGATGGATTCAACTATAGAAGAATTAAAAAAGCTTTTCCTTTTGGACTCCGTTGATACTGTACGGATTGTAGGAATTTGTGGGATGGGAGGAATAGGAAAGACAACTCTTGCTACTTCTCTATATGACAGAATCTCTCGCCAATATGATGCTTGCTGCTTCATCGATGATATCAGCAAAGTTTATAGAGATGATGGTCCAATCGATGCTCAAAAACAAATTCTACATCAAGTTCTAGGTGAAGAACATCTTCAGATATCCAATCTCTACAACACAACTAATTTGATACGAAGTAGGCTAGGTCATTTAAGAACCCTTCTAGTTCTTGATAATGTTGATCAAGTTGAACAACTAGAGAAATTAGCTGTGAATAGGGAGTGTTTAGGTGTTGGGAGTAGAATCATTATAACTTCTAGAGATGCTCATATCTTGAAAGAGTATGGAGTTGATGAAGTTTACGAAGTTCCACTCATGAATAAGACTGACTCTCTTCAATTATTTTGTCGAAAAGCTTTCAAGTGTGGTAACATTTTCAGTAATTATGAGGAGTTGACGTATGACATATTAAATTATGCTAATGGCCTGCCACTAGCAATTAAAGTTTTGGGCTCATTTTTGTTTGGCCGAGATATATCTGAATGGAGAAGTGCATTGGCTAGATTGAGAGAAAGTCCAAACAAAGATATCATGGATGTGCTGCGATTAAGTTTTGAAGGGTTAGAGAGATTGGAGAAAGAAATATTTCTTCATATTGCTTGTTTTTTCAACCATCTCAAAGTGGAATATGTTAAGAATGTTCTAAATTGTTGTGGATTTCATTCTGATATTGGATTAAGAGTTTTAATTGATAAATCACTTATAAGCATTTATGACAATTTTTTTGTTAAAATGCATAGTTTGTTAGAAGAGCTAGGCAAGAAAATTGTTCAAGAAAATTCAACCAAAGACTTGAGAAAGTGGAACAGGTTGTGGCTCCACAAACATTTCGACAACGTGATGTTGGAGAATATGGAAAAGAATGTCGAAGCCATAGTTTTGAAGCATCAATATCCAAGAGAAACAATAACATTGGCAACAGAAACATTGTCAAATATGAGTCATCTTAGATTAATCATACTCAAGGATGTGCATTTTTCTGGAAGCCTGAGTTGTCTTTCAAATGAATTGAGATATGTTGACTGGCCTGGATATCCTTTCATGTATTTGCCTATAAGTTTTCAGCCCAATCAACTTGTTGAATTGATTTTGAAGCATAGCAGCATCAAACAACTATGGGAAGGCAAGAAGTATCTGCCCAATTTGAGAACTATGAATCTGAAGCACTCCAAAAACCTAATCAAGATGCCAGATTTTGGAGAGGTTCCGAATCTTGAGTGGCTGAATCTCAAAGGATGTGTAAATCTTGTGCAGATGGATCCATCTATTGGTCTTCTGAGAAAGCTTGTTTTCTTGAAGTTGAAAGATTGCAAAAATCTAATAAACATACCCAACAACATATTTGGTATTGGCTCTCTTAAATATCTAAATCTTTCCGGGTGTTCCAAAGTGTTTAACAATCCAAAGCATTTGAAGAAACTTGATTCGAGAGAAAGTGAATTACATTCACAATCGATGTCCTCGGTGTTGAAATGGATCACGCTGCCTTTCCGTTCCTTGTATACCAAAGCAAACAAAGGATTAGGTAGTTGTTTGTTGTCATCCTTCCCTAGCTTTTCTTTTTTGCGGGAACTTGATATTAGTTTTTGTGGTCTAAGCCAAATCCCAGATGCAATTGGATGTATACGATGGTTAGGAAGATTAAACTTGTCGGGAAATAATTTTGTGACACTGCCTAGTCTTGGGGAGCTTTCTAAACTTGTATATTTAAACTTACAGCACTGCAAGCAGTTGAAATTTTTGCCTGAGCTCCCTTTGCCTGTTGCTATCAAGCAGGATCAAAATGGGAAGAGGGGAGGATTGTATATTTTTAACTGTCCTGAATTGGGGGAGAGAGAACATTGTAGTAGCATGACTTTTTCATGGATGATACAATTCGTTCAGGCGAACCAAGAATCCTCTGCCTGCTTTCCTTGGATTGATATTGTTATTCTCGGAAGTGAAATACCAAGATGGTTTAACAATCACAGTGTAGGTAATTCAATTAGCATAGACCTACCTCCGATTGTGCATGACAATAATTTTATTGGCCTTGCTTGTTGTGTAGTATTTTCTGTGACATTTAATGATCCAACTATGACAGCAAATGAATGCGGACCTGAAGCATGGCTAGGTTTTGAATGTGGCAATACTAGTTGGGTTTTTGCTCATTGTCCCGTAATATTTGACAGAGATCTTATTACAGTTGAATCAAACCACACGTGGCTAATCTATTTCCCTCGTGAACCTCTCTTTGATTTTCTGAGCTCTATGAACATGACATTCAGGGATCTTGATCATATCATAACGGTAACTCCCGTTGAGGACGGAGAAAGCTTTCATGTGGAGGTGAAGAAATGTGGATATCGTTGTGTATTTAAACAGGACCTACAACAGTTTAACTTAACAACGATGCACCACAGAAATTCGTTAGCTCGGAAACGCAAGTTTTTGGCAATTGAAGATTAG 3198 0.3684 MTSRSNHSSSTLVTLPMKKNHYDVFVSFRGKDTRFNFTDHLLAALQRKGIFAFKDDTKLQKGESIAPELFNAIQTSQVFIVVFSKNYASSTWCLQELDKILEFSQLYGKRVLPVFYDVDPSEVRHQKGSYGEAFSKHEQRFQHDTQMVQRWREALMQVANLSGWDMRHKSQYAEIEKIIEEVKNILGNKFSSLPKGLVGMDSTIEELKKLFLLDSVDTVRIVGICGMGGIGKTTLATSLYDRISRQYDACCFIDDISKVYRDDGPIDAQKQILHQVLGEEHLQISNLYNTTNLIRSRLGHLRTLLVLDNVDQVEQLEKLAVNRECLGVGSRIIITSRDAHILKEYGVDEVYEVPLMNKTDSLQLFCRKAFKCGNIFSNYEELTYDILNYANGLPLAIKVLGSFLFGRDISEWRSALARLRESPNKDIMDVLRLSFEGLERLEKEIFLHIACFFNHLKVEYVKNVLNCCGFHSDIGLRVLIDKSLISIYDNFFVKMHSLLEELGKKIVQENSTKDLRKWNRLWLHKHFDNVMLENMEKNVEAIVLKHQYPRETITLATETLSNMSHLRLIILKDVHFSGSLSCLSNELRYVDWPGYPFMYLPISFQPNQLVELILKHSSIKQLWEGKKYLPNLRTMNLKHSKNLIKMPDFGEVPNLEWLNLKGCVNLVQMDPSIGLLRKLVFLKLKDCKNLINIPNNIFGIGSLKYLNLSGCSKVFNNPKHLKKLDSRESELHSQSMSSVLKWITLPFRSLYTKANKGLGSCLLSSFPSFSFLRELDISFCGLSQIPDAIGCIRWLGRLNLSGNNFVTLPSLGELSKLVYLNLQHCKQLKFLPELPLPVAIKQDQNGKRGGLYIFNCPELGEREHCSSMTFSWMIQFVQANQESSACFPWIDIVILGSEIPRWFNNHSVGNSISIDLPPIVHDNNFIGLACCVVFSVTFNDPTMTANECGPEAWLGFECGNTSWVFAHCPVIFDRDLITVESNHTWLIYFPREPLFDFLSSMNMTFRDLDHIITVTPVEDGESFHVEVKKCGYRCVFKQDLQQFNLTTMHHRNSLARKRKFLAIED 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02096 1065 Gene3D - 356 439 IPR042197 -
Trre7g02096 1065 Pfam C-JID domain 896 1040 IPR045344 -
Trre7g02096 1065 SMART till_3 21 161 IPR000157 GO:0007165
Trre7g02096 1065 Pfam Leucine Rich Repeat 608 627 IPR011713 -
Trre7g02096 1065 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 164 IPR035897 -
Trre7g02096 1065 Pfam TIR domain 22 186 IPR000157 GO:0007165
Trre7g02096 1065 Gene3D - 16 185 IPR035897 -
Trre7g02096 1065 PRINTS Disease resistance protein signature 812 828 - -
Trre7g02096 1065 PRINTS Disease resistance protein signature 297 311 - -
Trre7g02096 1065 PRINTS Disease resistance protein signature 221 236 - -
Trre7g02096 1065 PRINTS Disease resistance protein signature 390 404 - -
Trre7g02096 1065 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
Trre7g02096 1065 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Trre7g02096 1065 Gene3D - 186 350 IPR027417 -
Trre7g02096 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 449 IPR027417 -
Trre7g02096 1065 Pfam NB-ARC domain 205 425 IPR002182 GO:0043531
Trre7g02096 1065 SUPERFAMILY L domain-like 554 835 - -
Trre7g02096 1065 Gene3D Ribonuclease Inhibitor 508 745 IPR032675 -
Trre7g02096 1065 Gene3D Ribonuclease Inhibitor 750 869 IPR032675 -
Trre7g02096 1065 ProSiteProfiles Leucine-rich repeat profile. 794 815 IPR001611 GO:0005515
Trre7g02096 1065 SUPERFAMILY "Winged helix" DNA-binding domain 426 526 IPR036390 -
Trre7g02096 1065 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 850 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02096 Trre-Chr7 16619172 16623680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02096 22 821 WRKY Transcription Factor Family AT4G12020 30.695 3.49e-86 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02096 - - mtr:11441353 1229.93