Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02087 ATGCGTCCAATGAGGAGAATCAATTACAATGTAGGAGACAAAGTAGAAGTGTGCTGCAAAGAAGAAGGGTTTGTTGGATCATACTTTGAAGCGACAATTGTTTCGTGTCTCGATAATGGAAAATATGTTGTTCGCTACAAGAACCTTTTCAAAGACGACGAGTCTGAACTTCTCACTGAGACATTCTTTCCAAAAGATCTTCGTCCACTACCGCCACAAGTTCGCAATCCTCCTTACTTCCAACTTAATCAAAAAGTGGATGTTTTTGATAAAGATGGTTGGTGGGTAGGGGAAATTGCAAGTGAGAAGACCCGCATGAAAAATACTTATTATTATAATGTGTATTTTGAGTATTATCATGAATCCATTTACTACCCTTGTGATCAAATTAGGGTTCATCATGAGTTGTCGTTTAATGGAGAGTGGATCTTGGAAGCTTAA 441 0.381 MRPMRRINYNVGDKVEVCCKEEGFVGSYFEATIVSCLDNGKYVVRYKNLFKDDESELLTETFFPKDLRPLPPQVRNPPYFQLNQKVDVFDKDGWWVGEIASEKTRMKNTYYYNVYFEYYHESIYYPCDQIRVHHELSFNGEWILEA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02087 146 Pfam Agenet domain 12 72 IPR008395 -
Trre7g02087 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 143 - -
Trre7g02087 146 Gene3D - 4 73 - -
Trre7g02087 146 CDD Tudor_Agenet_AtDUF_rpt1_3 11 72 - -
Trre7g02087 146 SMART agenet_At_2 7 75 IPR014002 -
Trre7g02087 146 SMART agenet_At_2 78 138 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02087 Trre-Chr7 16525588 16526028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02087 21 106 PHD Transcription Factor Family AT5G58610 32.743 7.51e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02087 - - cam:101489110 189.119