Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02076 ATGGAAATGGAAGATTTTGACTGGAGTTATGATATACTTGGAGATGCAAGTGTAACTGAGAGAAGAATTATTAAAGATGGTTTTCAAGTAAACAATAATGATGAAATTGGAAGTGGGTATGGTTCATCTTTCTCTTTGGTTTTGGATAGAGAAAGAGGTGTGCTTGTGGAAGCACCAGCTAAAATTGCACAAAAGGGTGTGTCTACTGAGAGAAGTGTTGAAGCTTTGAAGAATCATAGTGAGGCAGAGAGAAGGAGAAGAGCTAGGATTAATGCACATCTTGATACACTTCGTAGTGTGATTCCAGGTGCTTTGAAGATGGACAAAGCATCATTACTTGGTGAAGTTATTAAACATTTGAAAGAGCTAAAAAGAAATGCAACACAAGCAAGTGAAGGATTAATAATACCAAATGACAATGATGAAATAAGTGTTGAAGAACAAGAGTGTGGACTAAATGGTTTTCCATATTCAATCAAAGCATCACTATGTTGTGAATATCAACCAGGGTTATTGTCTAATATAAGACAAGCACTAGATGCTCTTCATCTCATAATCATGAAGGCAGATATTGCAACTTTTGGAGGCAGAATGAAGAATGTATTTGTTGTAATTAGCTGTGAGGAACATAATTTTGATGCTGCTGAATATAGACAGTTTCTTGCAGGTTCTGTTCACCAAGCTCTAAAATCTGTGCTCAATAGATTTTCTGTTTCACAAGATATGTTAGGAGCTAGAAAAAGAAGGAGGATTTCTATATTTAGTTCATCTTTAGAAGATTTCCTATAA 789 0.3523 MEMEDFDWSYDILGDASVTERRIIKDGFQVNNNDEIGSGYGSSFSLVLDRERGVLVEAPAKIAQKGVSTERSVEALKNHSEAERRRRARINAHLDTLRSVIPGALKMDKASLLGEVIKHLKELKRNATQASEGLIIPNDNDEISVEEQECGLNGFPYSIKASLCCEYQPGLLSNIRQALDALHLIIMKADIATFGGRMKNVFVVISCEEHNFDAAEYRQFLAGSVHQALKSVLNRFSVSQDMLGARKRRRISIFSSSLEDFL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02076 262 Gene3D - 69 132 IPR036638 GO:0046983
Trre7g02076 262 PANTHER TRANSCRIPTION FACTOR BHLH30 59 254 IPR045847 GO:0003700|GO:0006355
Trre7g02076 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Trre7g02076 262 Pfam Helix-loop-helix DNA-binding domain 78 123 IPR011598 GO:0046983
Trre7g02076 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 129 IPR036638 GO:0046983
Trre7g02076 262 CDD ACT_UUR-ACR-like 162 233 - -
Trre7g02076 262 SMART finulus 80 129 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02076 Trre-Chr7 16451191 16452866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02076 60 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.640 5.38e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g02076 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02076 - - aprc:113859663 379.022