Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02057 ATGCAGAGAAATAGTAACAACAATGGTATGCATCAAGCATGTGCAGCATGCAAACATCAAAGAAAAAAATGCAGTGAAAATTGCATATTAGCACCTTATTTTCCATCAAATAGAAGTAAAGAATTCAAAGCAGCGCACAAAGTTTTTGGTGTTAGCAACATAACAAAGTTGGTAAGGAATGCTCAAGAAGTAGATAGAAGAAGAGTTGTGGATTCATTGATATGGGAAGCAATTAATAGACAAAAGGATCCTATAAATGGTTCTTATGGAGAGTATATAAAAGTATGCAATGAGTATAAAAAAATATTTGAAGAACTTAAGATGTTTAGAGAACACCAAAATCAATTGTTGCAAATGCCACCTCATCATCATGAGAACAAGAATGGTATTATGGATTCTACTACAATTTATAATACATATTGTTCAAATTATTTACAAGATTTTCAGAGTTTGAGGACAGAAGTTGTCATCCCAATTCAGCAGCACTCACAGTCATACTATATTGCAGGTGATGAATTCAACCAGTGA 528 0.3277 MQRNSNNNGMHQACAACKHQRKKCSENCILAPYFPSNRSKEFKAAHKVFGVSNITKLVRNAQEVDRRRVVDSLIWEAINRQKDPINGSYGEYIKVCNEYKKIFEELKMFREHQNQLLQMPPHHHENKNGIMDSTTIYNTYCSNYLQDFQSLRTEVVIPIQQHSQSYYIAGDEFNQ 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02057 175 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
Trre7g02057 175 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Trre7g02057 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02057 Trre-Chr7 16288643 16290625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02057 11 110 AS2 family AT1G06280 60.000 9.13e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre7g02057 LOB 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02057 - - mtr:112420889 292.352