Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02056 ATGGCGGTTCCATTTCTTCTCCGTTCTCTCTACTCTTCCACCAAAAAATCCTTTTCCTCTTCTTCACCTCTCTCTTCATCTCCTTATCGTTTCTTCTCCCGCGCTTTCTCTTCCGCTCCCGCCGTCGCCACCAACCCTGCCGTATTCCCCGACCCTAGCCGCCTCCGCAACGTCGCCGTCATCGCTCATGTCGATCACGGCAAGACAACTCTCATGGACCGACTTCTCCGTCAGTGCGGTGCTGATATCCCTCACGAACGCGCCATGGATTCCATTAACCTCGAAAAGGAGCGCGGCATCACCATCTCTTCCAAGGTTACTTCTGTTATGTGGAAAGAAAATGAGCTCAACTTGGTGGATACTCCTGGACACGCTGATTTTGGTGGTGAGGTTGAACGTGTAGTTGGTATGGTTGAGGGAGCAGTTTTGGTTGTCGATGCTGGGGAAGGTCCACTTGCCCAAACTAAGTTTGTTCTTGCGAAAGCCTTAAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGATCGGCCATCAGTTACCGAGGAGATGTGTGATGAAGTTGAGAGTCTGGTATTTGATCTATTTGCCAACATGGGTGCTACAGAGGAGCAACTTGACTTCCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTATACCAAGGATCCTCCTGCCGAGGCCAAAAATATGTCAGTGTTACTTGATGCCATTGTATCACATGTCCTTCCACCAAATGCAAACATTGATGCCCCTTTCCAAATGCTGGTTTCAATGATGGAGCGGGACTCTTATCTTGGACGGATTTTGACCGGTCGTGTTTATTCTGGGGTTGTTCGTATTGGTGACAGGGTTCACGGACTACGTAATAAAGTTTCTGGCGCTGAAAAAATTGAAGATGGAAAGGTGCTGAAAGTAATGAAAAGGAGGGGTACATCCATGATTGTAACTGATTGTGCTGGAGCTGGCGATATAGTTTCAATTGCTGGTTTGTCAAGTCCATCAATCGGCCATACAGTCACTACTGTGGAGATTATGTCTGCATTACCCACAGTTGAATTGGACCCCCCAACAATTTCTATGACCTTTGGTGTAAATGACTCTCCATTAGCTGGTCGTGATGGTACTCATTTAACTGGGGGAAAAATTGGTGATCGACTAATGGCTGAAGCTGAAACCAACCTTGCCTTAAATGTGCTTCCAGGCATATCAGAAACATTTGAAGTTCAAGGAAGAGGAGAACTACAGCTGGGTATTTTAATTGAGAATATGAGGCGTGAGGGATTTGAGCTATCTGTCTCTCCACCTAAAGTCATGTATAAAACTGACAATGGTCATAAACTTGAGCCAATAGAAGAAGTTACAATTGAGGTAAATGATGAACACGTTGGCTTTGTAATGGAGGCCTTGTCTCACAGACGAGCTGAGATTACTGACATGGGTCCTGTCGCGGGAGCTGTTGGTCGAACTAAATTGTGTTTGACTTGTCCATCAAGGGGATTGGTTGGTTACAGGAGTGTGTTCAGCAGTGAGACACGTGGAACTGGGTTCATGCACCGTGCTTTCCTCACATATGAAAAATTTCGAGGCCCTCTTGGCAATGTGAGGAAAGGAGTACTGGTATCAGTGGGTTATGGTCCAATCACAGCTCATGCATTAATGAGCTTAGAAGCTCGTGGGACTCTTTTTGTATCTCCTGGAATGGAGACATATGATGGAATGATTGTTGGAGAACATTCACGGGATACAGATCTTGATGTTAATCCAGTGAGGGCTAAAAAACTTACAAATATACGTTCTGCTTCCAATGATGAGAATGTGAAGCTGACTCCTCCTCGCCTTATGACGCTTGAAGAAGCTATAGGGTATGTAGCTTCAGACGAGCTTATCGAGGTTACTCCAAAGACCATACGGTTAAGAAAGAAATACCTTGATGCTAACAAGCGTAAAACCATGAGTAAAAGGCAAAACGAATGA 1992 0.4543 MAVPFLLRSLYSSTKKSFSSSSPLSSSPYRFFSRAFSSAPAVATNPAVFPDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLEKERGITISSKVTSVMWKENELNLVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEEMCDEVESLVFDLFANMGATEEQLDFPVLYASAKEGWASTTYTKDPPAEAKNMSVLLDAIVSHVLPPNANIDAPFQMLVSMMERDSYLGRILTGRVYSGVVRIGDRVHGLRNKVSGAEKIEDGKVLKVMKRRGTSMIVTDCAGAGDIVSIAGLSSPSIGHTVTTVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLALNVLPGISETFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTDNGHKLEPIEEVTIEVNDEHVGFVMEALSHRRAEITDMGPVAGAVGRTKLCLTCPSRGLVGYRSVFSSETRGTGFMHRAFLTYEKFRGPLGNVRKGVLVSVGYGPITAHALMSLEARGTLFVSPGMETYDGMIVGEHSRDTDLDVNPVRAKKLTNIRSASNDENVKLTPPRLMTLEEAIGYVASDELIEVTPKTIRLRKKYLDANKRKTMSKRQNE 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02056 663 Gene3D - 53 251 IPR027417 -
Trre7g02056 663 NCBIfam translational GTPase TypA/BipA 55 655 IPR006298 GO:0003924|GO:0005525
Trre7g02056 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 260 IPR027417 -
Trre7g02056 663 CDD BipA_III 362 439 IPR047043 -
Trre7g02056 663 FunFam Elongation factor family protein 252 356 - -
Trre7g02056 663 FunFam GTP-binding protein TypA 540 626 - -
Trre7g02056 663 Pfam Elongation factor G C-terminus 453 535 IPR000640 -
Trre7g02056 663 Pfam Elongation factor Tu domain 2 272 346 IPR004161 GO:0005525
Trre7g02056 663 NCBIfam small GTP-binding protein domain 56 192 IPR005225 GO:0005525
Trre7g02056 663 SUPERFAMILY EF-G C-terminal domain-like 454 570 IPR035647 -
Trre7g02056 663 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 90 105 IPR031157 -
Trre7g02056 663 FunFam GTP-binding protein TypA 363 469 - -
Trre7g02056 663 FunFam GTP-binding protein TypA 445 539 - -
Trre7g02056 663 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 53 251 IPR000795 GO:0003924|GO:0005525
Trre7g02056 663 CDD BipA_TypA_II 258 355 IPR047042 -
Trre7g02056 663 Pfam Elongation factor Tu GTP binding domain 54 247 IPR000795 GO:0003924|GO:0005525
Trre7g02056 663 Gene3D bipa protein 540 655 IPR042116 -
Trre7g02056 663 FunFam GTP-binding protein TypA 54 251 - -
Trre7g02056 663 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 52 225 - -
Trre7g02056 663 SUPERFAMILY Translation proteins 201 355 IPR009000 -
Trre7g02056 663 CDD TypA_BipA 55 250 IPR047041 -
Trre7g02056 663 Gene3D - 445 539 - -
Trre7g02056 663 Gene3D Translation factors 252 356 - -
Trre7g02056 663 SUPERFAMILY EF-G C-terminal domain-like 360 443 IPR035647 -
Trre7g02056 663 Gene3D Elongation Factor G (Translational Gtpase), domain 3 363 647 - -
Trre7g02056 663 PRINTS GTP-binding elongation factor signature 97 105 IPR000795 GO:0003924|GO:0005525
Trre7g02056 663 PRINTS GTP-binding elongation factor signature 169 178 IPR000795 GO:0003924|GO:0005525
Trre7g02056 663 PRINTS GTP-binding elongation factor signature 57 70 IPR000795 GO:0003924|GO:0005525
Trre7g02056 663 PRINTS GTP-binding elongation factor signature 117 127 IPR000795 GO:0003924|GO:0005525
Trre7g02056 663 PRINTS GTP-binding elongation factor signature 133 144 IPR000795 GO:0003924|GO:0005525
Trre7g02056 663 CDD BipA_TypA_C 454 534 IPR035651 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02056 Trre-Chr7 16261047 16277947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02056 54 178 Eukaryotic Initiation Factors Gene Family AT3G22980 43.511 7.93e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02056 K06207 - gmx:100789218 1117.83