Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02052 ATGGGTGGATTCATGTTAGGTTCAAAGAAGAAGAAAAACAACAAGAGTCAAGGTGGTTTTGAAACACTAGGTCTAAATCCAAATGTATTCAGAGGAATCAGACGGAAAGGTTACAAAGTTCCGACTCCAATTCAGAGGAAGACGATGCCTCTCATTCTCTCCGGCGTCGATGTCGTTGCAATGGCTCGTACTGGCTCTGGTAAAACGGCAGCGTTTCTTGTTCCCATGCTTCACCGACTTAACCAGCATATTCCTCAGGGTGGCATTAGAGGACTCATTTTGTCTCCAACTAGGGATTTGGCACTTCAAACTCTTAAGTTTACTCAAGAGCTTGGTCACTTCACAGACCTTCGTGTTAGTTTGTTAGTTGGCGGTGATAGTATGGAAAGTCAATTTGAGGAGTTATCTCAGAGTCCAGACATTATAATTGCCACACCTGGCAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCCTTGCGTAAGGTGGAGTATGTTGTTTTTGATGAGGCTGATTGTTTATTCGGGATGGGTTTTGCTGAGCAGCTACATCAAATTCTTGCTCAGCTTGGTGAGAACCGTCAGACTTTGCTTTTCAGTGCCACATTACCCAGCGCTCTTGCAGAATTCGCTAAGGCCGGTCTGCGAGACCCTCGCCTTGTTCGCCTTGATTTGGAAACTAAAATTAGCCCTGACTTGAAGCTTGTCTTTTTCACTTTGAGGCAGGAAGAGAAGTATGCTGCTTTGCTCTATTTAATTAGGGAACTTATCGGTTCCGATGAGCAGACTTTAATTTTTGTATCCACTAAACATCATGTTGAGTTTCTCAACTCGTTGTTTCGGCAAGAGGGTATTGAGCCTTCTGTATGTTATGGAGACATGGATCAAGATGCTCGCAAAATCAATGTGTCCAAGTTTAGGTCTAGAAGGACAATGTTGTTGATTGTCACTGACATTGCTGCTCGGGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCTTCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGAGTTGCAAGGGCGGGTCGTACTGGTACTGCTTATTCTTTCTTGACTACCGAGGATATGGCTTACCTCTTGGATCTTCATTTGTTTCTCTCAAAACCAATCAAAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGGATATGGATGGAGTAATGTCAAGAATTGACCAGGCAATGGCAAACAGAGAGACCATTTATGGCCGATTTCCACAAAAAGTCATTGACCTTGTTTCTGACAGAGTTAGGGAAGTTATTGATACTTCTGCAGAGCTGGAAGCGTTGCAGAGAGCCTGTAAAAATGCATTCCGTTTATATTCTAAAACGAAACCCTTACCCTCAAAGGAGTCCATAAGAAGAGTAAAGGATTTGCCAAAGGAAGGTCTGCATCCTATTTTCAACAAAATGTTGGGAACGGGGGAGTTAACGGCAATTGCATTTTCCGAGCATTTGAAAAAGTTTAGGCCAAAGAACACAATTTTGGAAGCAGAAGGAGAAGCAGCTAAATCAAAGGGTGGTCAGCGGGTTGATGTGATGAAAAGGAAAAGAGCCATTCATGATATCACTATAAAGTTGGTTCATGAACACCAGTGTAAGACTAAGAGTAATAGTGAAAAGGATGAAAATCAATTGGAAAATACTTCTTCCGTGGAGAAAGGGAGAAAAGCAGCACGTGGTTCTAAGAGAAAGCCAGAAAGCTTCAAGGATGAGGATTTCTATATAAGTTCCATACCTAAAAATCATCACATGGAGGCAGGTCTTGCAGTAAAAGCTAAAGAAGGCTTTTCTTCAAACAGATTGGATGATGCTGTCCTAGATCTAGTTGCAGATGATGGTGCTGGCATTAAGAAACAAAAATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCCAATGGAAAGATAAAGACAGAGAGTGGTGCGAAAACAAAGACCAACAAGACTGGTATATATAAAAAGTGGAAGGAACGCTCACACTCCAAGATATCTCTTAAAGGGACAAGTGCTGATGGTGATGCTCAGGAATCAACAAGTTCTAGAGGATCTTACCGAGATGGTGGTAGGAATTTCAGAGGCGGCAAGAAGCAGCATTCAATGCCGAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAGGAAAGCCAACAAAATATCTTATATGAAGAGCAAGTCACCAAAGGGTAAAAAATCTGGCAGAAAGGGAAATAATAAAAGAAAATCTAAGTAG 2328 0.4197 MGGFMLGSKKKKNNKSQGGFETLGLNPNVFRGIRRKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLVPMLHRLNQHIPQGGIRGLILSPTRDLALQTLKFTQELGHFTDLRVSLLVGGDSMESQFEELSQSPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFRQEGIEPSVCYGDMDQDARKINVSKFRSRRTMLLIVTDIAARGIDIPLLDNVINWDFPSKPKIFVHRVGRVARAGRTGTAYSFLTTEDMAYLLDLHLFLSKPIKAAPTEEEVLQDMDGVMSRIDQAMANRETIYGRFPQKVIDLVSDRVREVIDTSAELEALQRACKNAFRLYSKTKPLPSKESIRRVKDLPKEGLHPIFNKMLGTGELTAIAFSEHLKKFRPKNTILEAEGEAAKSKGGQRVDVMKRKRAIHDITIKLVHEHQCKTKSNSEKDENQLENTSSVEKGRKAARGSKRKPESFKDEDFYISSIPKNHHMEAGLAVKAKEGFSSNRLDDAVLDLVADDGAGIKKQKSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKTNKTGIYKKWKERSHSKISLKGTSADGDAQESTSSRGSYRDGGRNFRGGKKQHSMPNAHVRSEIKDMDQIRKERQRKANKISYMKSKSPKGKKSGRKGNNKRKSK 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02052 775 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Trre7g02052 775 MobiDBLite consensus disorder prediction 685 775 - -
Trre7g02052 775 MobiDBLite consensus disorder prediction 726 750 - -
Trre7g02052 775 SMART ultradead3 37 237 IPR014001 -
Trre7g02052 775 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Trre7g02052 775 CDD SF2_C_DEAD 244 365 - -
Trre7g02052 775 MobiDBLite consensus disorder prediction 751 775 - -
Trre7g02052 775 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Trre7g02052 775 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 686 - -
Trre7g02052 775 MobiDBLite consensus disorder prediction 1 21 - -
Trre7g02052 775 Pfam DBP10CT (NUC160) domain 621 682 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Trre7g02052 775 Gene3D - 5 225 IPR027417 -
Trre7g02052 775 MobiDBLite consensus disorder prediction 544 579 - -
Trre7g02052 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Trre7g02052 775 CDD DEADc_DDX54 18 223 IPR033517 -
Trre7g02052 775 SMART helicmild6 275 356 IPR001650 -
Trre7g02052 775 MobiDBLite consensus disorder prediction 690 710 - -
Trre7g02052 775 Gene3D - 235 470 IPR027417 -
Trre7g02052 775 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Trre7g02052 775 SMART DBP10CT_2 621 683 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Trre7g02052 775 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02052 Trre-Chr7 16240388 16248381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02052 20 389 Eukaryotic Initiation Factors Gene Family AT1G72730 32.258 7.36e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02052 K14808 - gmx:100806274 1252.65