Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02036 ATGGATGAAGTAGAAATGACAAATGGTAATAATTTTCCTCAAAATCCAACATCTAGTGCTTCTAATAACCCTCCTACTTTGAAGAGAAAAAGAAACCTCCCAGGAAATCCAGATCCTGAAGCAGAAGTTATAGCTTTATCACCAAAGACACTTATGGCTACAAACAGATTCTTGTGTGAAACATGTGGGAAAGGTTTTCAAAGAGATCAAAATCTACAACTCCATAGACGCGGACATAATCTTCCATGGAAGCTTAAGCAGAGAACAAATAAAGAAATAAAGAAAAGAGTTTATGTTTGTCCTGAGAAGAGTTGTGTTCATCATGATCCTTCAAGGGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCATGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGTTATGCTGTTCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATAACTCATAGAGCCTTTTGTGATGCATTAGCAGAAGAAACAGCAAGAGTAAGTGCAGCATCAGAAATAAACAACAATTCATTATTAAGGGATAATATTGGTAATTACAACATAATGGGAACAACAACATCCTTAGTTCCTAACAACAACATGCCAAATCATTTTTCATCAATTTTCAAACCAATTTCAACTTCTCATGAATCAACCAATCAAACAAGAGGACTCTCTCTATGGTTGAATCAAAATCAAACATCTCATAATTCTCAACCTCATGAAACCAATGGTAATTTGCATGAGATTCATCATCATCATCATCATCATCAACAACAACTTGACACATCATCAAGAGGATTATTATATGGTGTGAATGATAATAATCCAAACTCAAATAATTATCAGCTTAATTGGGTTTATGGAAATAAACTTAACCAAGATTTAATTACTAGTACTACAACTTCACTTCCACTAGGAAACATTAATGTTAATGTTAAGGATCATGTTACAAACCAACAAATTTCTTCTTCCTTGTATAGCTCACAACATCAAATACAAACAAATCAAACATCATCAGCAAACATGTCAGCTACAGCTTTGTTACAAAAAGCTGCTCAAATTGGATCAACATCAAGTGACACATCATTTCTTGGAAGTTTAGGTTTGAAATGCAGTAATAATAATAACATTATTACTAATGATGTGAATAAGTTTGGTGGTAATAATTCTGGTATGTATGGTACTACAAGTTCATTACTCATTAGTCTTGGAAATGAAGAAGATCATAACACTGCATGTGATTTTACACAAATGCACCCTTCTAAACGTAGACATGTTCAAAGTGATGAGAATGGTGGTGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCATCCTTCATCAATCAATGGATGGATTTGA 1452 0.345 MDEVEMTNGNNFPQNPTSSASNNPPTLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIKKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINNNSLLRDNIGNYNIMGTTTSLVPNNNMPNHFSSIFKPISTSHESTNQTRGLSLWLNQNQTSHNSQPHETNGNLHEIHHHHHHHQQQLDTSSRGLLYGVNDNNPNSNNYQLNWVYGNKLNQDLITSTTTSLPLGNINVNVKDHVTNQQISSSLYSSQHQIQTNQTSSANMSATALLQKAAQIGSTSSDTSFLGSLGLKCSNNNNIITNDVNKFGGNNSGMYGTTSSLLISLGNEEDHNTACDFTQMHPSKRRHVQSDENGGGGQTRDFLGVGVQTICHPSSINGWI 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02036 483 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Trre7g02036 483 FunFam protein indeterminate-domain 12-like 36 104 - -
Trre7g02036 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Trre7g02036 483 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Trre7g02036 483 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 471 IPR031140 -
Trre7g02036 483 Gene3D Classic Zinc Finger 91 181 - -
Trre7g02036 483 MobiDBLite consensus disorder prediction 7 29 - -
Trre7g02036 483 Gene3D Classic Zinc Finger 53 80 - -
Trre7g02036 483 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Trre7g02036 483 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02036 Trre-Chr7 16114090 16116720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02036 21 483 IDZ Gene Family AT1G03840 52.071 3.15e-150 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g02036 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02036 K25870 - gmx:100790620 594.734