Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02035 ATGCTAAAAAAGATGGATGAAGTAGAAATGACAAATGGTAATAATTTTCCTCAAAATCCAACATCTAGTGCTTCTAATAACCCTCCTACTTTGAAGAGAAAAAGAAACCTCCCAGGAAATCCAGATCCTGAAGCAGAAGTTATAGCTTTATCACCAAAGACACTTATGGCTACAAACAGATTCTTGTGTGAAACATGTGGGAAAGGTTTTCAAAGAGATCAAAATCTACAACTCCATAGACGCGGACATAATCTTCCATGGAAGCTTAAGCAGAGAACAAATAAAGAAATAAAGAAAAGAGTTTATGTTTGTCCTGAGAAGAGTTGTGTTCATCATGATCCTTCAAGGGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCATGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGTTATGCTGTTCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATAACTCATAGAGCCTTTTGTGATGCATTAGCAGAAGAAACAGCAAGAGTAAGTGCAGCATCAGAAATAAACAACAATTCATTATTAAGGGATAATATTGGTAATTACAACATAATGGGAACAACAACATCCTTAGTTCCTAACAACAACATGCCAAATCATTTTTCATCAATTTTCAAACCAATTTCAACTTCTCATGAATCAACCAATCAAACAAGAGGACTCTCTCTATGGTTGAATCAAAATCAAACATCTCATAATTCTCAACCTCATGAAACCAATGGTAATTTGCATGAGATTCATCATCATCATCATCATCATCAACAACAACTTGACACATCATCAAGAGGATTATTATATGGTGTGAATGATAATAATCCAAACTCAAATAATTATCAGCTTAATTGGGTTTATGGAAATAAACTTAACCAAGATTTAATTACTAGTACTACAACTTCACTTCCACTAGGAAACATTAATGTTAATGTTAAGGATCATGTTACAAACCAACAAATTTCTTCTTCCTTGTATAGCTCACAACATCAAATACAAACAAATCAAACATCATCAGCAAACATGTCAGCTACAGCTTTGTTACAAAAAGCTGCTCAAATTGGATCAACATCAAGTGACACATCATTTCTTGGAAGTTTAGGTTTGAAATGCAGTAATAATAATAACATTATTACTAATGATGTGAATAAGTTTGGTGGTAATAATTCTGGTATGTATGGTACTACAAGTTCATTACTCATTAGTCTTGGAAATGAAGAAGATCATAACACTGCATGTGATTTTACACAAATGCACCCTTCTAAACGTAGACATGTTCAAAGTGATGAGAATGGTGGTGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCATCCTTCATCAATCAATGGATGGATTTGA 1464 0.3443 MLKKMDEVEMTNGNNFPQNPTSSASNNPPTLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIKKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINNNSLLRDNIGNYNIMGTTTSLVPNNNMPNHFSSIFKPISTSHESTNQTRGLSLWLNQNQTSHNSQPHETNGNLHEIHHHHHHHQQQLDTSSRGLLYGVNDNNPNSNNYQLNWVYGNKLNQDLITSTTTSLPLGNINVNVKDHVTNQQISSSLYSSQHQIQTNQTSSANMSATALLQKAAQIGSTSSDTSFLGSLGLKCSNNNNIITNDVNKFGGNNSGMYGTTSSLLISLGNEEDHNTACDFTQMHPSKRRHVQSDENGGGGQTRDFLGVGVQTICHPSSINGWI 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02035 487 FunFam protein indeterminate-domain 12-like 40 108 - -
Trre7g02035 487 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Trre7g02035 487 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Trre7g02035 487 MobiDBLite consensus disorder prediction 1 43 - -
Trre7g02035 487 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Trre7g02035 487 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 475 IPR031140 -
Trre7g02035 487 MobiDBLite consensus disorder prediction 11 33 - -
Trre7g02035 487 Gene3D Classic Zinc Finger 95 185 - -
Trre7g02035 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Trre7g02035 487 Gene3D Classic Zinc Finger 57 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02035 Trre-Chr7 16114090 16116732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02035 25 487 IDZ Gene Family AT1G03840 52.071 2.06e-150 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g02035 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02035 K25870 - gmx:100790620 594.734