Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02030 ATGGAGGGTGGTTGTTCAGAAGAAGAGGAGAAGAAGAAGAAGAACAAGACACTAGAGGAAGAGAACAAGGTTAAACGCAAAATGAAGTCTGCTTCACAGTTAGAGATTCTTGAAAAAACATATGCTGCTGAGTCTTACCCTTCTGAAGCAATGAGGGCTGAGTTATCTGTCAAGTTAGGTTTGTCTGATCGTCAGTTGCAGATGTGGTTCTGTCACCGGAGACAGAAGGATAGGAAGGCTACAATGGTGGTGGTTAAGAACGAGGTCACACTAACTCCGCCTTCATTCGAGGAGGGTGTTGAGCAAATACCAGTTGCTGATGTTAATCATGGTTTGGTTTCTGTCTTGAGACCAATTGGTCATGTGGACTTGCCGCAATTTGTGGCACAGCACGGGTTGATGGCATTTCCTAGGATGATGGAATTGCCTGCAATGGATAGCAGTAGTTATCTTGAATCTCATCGGACTATACAGGACCTGCGAGTTGTTGCATTTGTGGAAAGACAATTGGGGGCGCCATTGAGAGAGGACGGACCCATTCTTGGGATTGAATTTGATTCCCCGCCCCTGGGTGCATTTGGTGCACGATTAGGGGCAGTGGCAATGGGGCAACACAGGCAATCTGAATGGCCTGTTGAGGAAAAAGCTTATGCACATTTTGATAAGGGAATTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAGCAGCCAACTGTTAGAAATGAGATATATGAGAGAGTTACTGCTACATCTATCCACTTAAGTTCTCTCGATGGTGTTGCACATTCTAGGACATCACTATCTAGTGGGCCATCTTTCCTTAATGGGAATGAATCTGCACCTAAGGTGTATGGAGTCCAAGGAGGGAATGATGATGGTCCACGAAAGAACCCATTTGCCGATGTAATTCTTGACATTCAAAGGGGGGCACACCTTGTAACTCCGATTGACGGCCCTCTAGTGCCATCTGACAGGAGGGTTATCCATGAGGAAGAACTTTCAAGGTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGAATGCAACGGGAACTTGAAGTGCAAGAAAAAAGAATTAGAAAAGAGCTTGTAAAACAGGATATTTTAAGGCAAAAGAGAGAGGAGCAAATAAAGAAAGAGATGGAAAGGCAAGAACGTGAAAGGCAGAAGGAAGAGGAAAGGTTACTGCGTGAAAGACAGCGAGAGGAGGATAGGCTCCTTAGAGAACAGAGACGCGAGCAGGAGCGGCGGGAGAAGTTTTTGCAGAAGGAGTCAATCAGAATTGAGAAACTGAAACAGAAGGAAGAACTAAATAGGGTGAAAGAGGAGGCAAGGATTAAAGCTGCCAGTGAGAGAGCCATTGCCCGCAGAATGGTCGACCTTATTGAAGATGAACGTCTGGAACTCATGGAATTAGCTGCATCAAAGAAGGGGCTATCTTCAATACTGGCTCTTGACGATGAAACTATGCAAAATCTTGAATCATATGGAGGTGAATAA 1500 0.4467 MEGGCSEEEEKKKKNKTLEEENKVKRKMKSASQLEILEKTYAAESYPSEAMRAELSVKLGLSDRQLQMWFCHRRQKDRKATMVVVKNEVTLTPPSFEEGVEQIPVADVNHGLVSVLRPIGHVDLPQFVAQHGLMAFPRMMELPAMDSSSYLESHRTIQDLRVVAFVERQLGAPLREDGPILGIEFDSPPLGAFGARLGAVAMGQHRQSEWPVEEKAYAHFDKGISRTLHEYQFIPEQPTVRNEIYERVTATSIHLSSLDGVAHSRTSLSSGPSFLNGNESAPKVYGVQGGNDDGPRKNPFADVILDIQRGAHLVTPIDGPLVPSDRRVIHEEELSRFQRKRKNEEARMQRELEVQEKRIRKELVKQDILRQKREEQIKKEMERQERERQKEEERLLRERQREEDRLLREQRREQERREKFLQKESIRIEKLKQKEELNRVKEEARIKAASERAIARRMVDLIEDERLELMELAASKKGLSSILALDDETMQNLESYGGE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02030 499 Pfam Homeodomain 25 79 IPR001356 GO:0003677
Trre7g02030 499 SUPERFAMILY Homeodomain-like 21 79 IPR009057 -
Trre7g02030 499 SMART HOX_1 22 84 IPR001356 GO:0003677
Trre7g02030 499 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 496 IPR044977 GO:0006357
Trre7g02030 499 Coils Coil 327 354 - -
Trre7g02030 499 CDD homeodomain 23 79 IPR001356 GO:0003677
Trre7g02030 499 MobiDBLite consensus disorder prediction 1 29 - -
Trre7g02030 499 Coils Coil 370 417 - -
Trre7g02030 499 Coils Coil 423 452 - -
Trre7g02030 499 Coils Coil 8 28 - -
Trre7g02030 499 Gene3D - 3 82 - -
Trre7g02030 499 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02030 Trre-Chr7 16075944 16079612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02030 1 496 Homeobox Transcription Factor Family AT5G44180 45.298 2.20e-101 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre7g02030 Homeodomain 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02030 - - lja:Lj0g3v0211739.1 530.791