Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02011 ATGGCAGTATCTGATGGAGTCCAAACCCCAGCCCCAACCACTCAGATGGTTGGCAATGCTTTTGTCGAGCAGTATTACTCGATTCTTCACCGTAACCCGGATCAGGTTCATAGGTTTTACCACGAGGAAAGTGTCATGAGTCGTCCTGAGGAAGACGGTACCATGACAACTGTCACTACCACTGCTGAAATTGATAAAAAGTTAAAATCTCTTGATTACACAAGCTTTAGGGTTGAGGTTCTGAGTGCTGATGCTCAGCCTTCATATACAAACGGGGTAATGGTTGTAGTGACTGGCTGCTTGACCGGAACTGACAATGTTAAACGCAAATTTGCTCAGTCCTTTTTCCTAGCTCCACAGGACAACGGCTTCTATGTTTTGAATGATGTTTTTAGATATGTTGATGCGTATAAGTCTGTTGATATTGAGGCTGTACCAGCAAATGTTGCTGATGAAAGTGCTCCAGCAGAAGCTTTTACTCCAGTTCCTGAGCCTATTCGTGTTGCTGAAGACATTCCACCCAGTCAACCTGCTGTTATTGCTGATACTGACACTAACATCAGCAAAGAAGTGAGCTTACCACTGGAGAATGGAAAATTATCAGTTACTGAAAATGTGATTCCTGTTAATCATGTTAAAGAGTCAAGTCATCAGGAACAACCCGCAAGCATTGAGAAAGTTCCTTCAAATACACAGGAAGATGCTCCTAAAAAGTCTTTTGCATCCATTGTGAATGCCTTGAAAGATAATTCTGCTCCCTTCCATTTGAGGACTTCTCCTGCCAAACCCGCTGTGCAACCACACCGCGTACATAGCGTGCCTGCTCCTGAAGCACCAGCCCCTAACATGGACATTCCATTGGAAAGGAATAATGAGAATGGAGGTAGGGCTCATGCAATATTTGTTGCGAATTTGCCTATGACTGCAACAGTGGAACAATTGGACCGGGTTTTCAAGAAATTTGGGTCCATCAAGCGTGATGGTATTCAAGTTAGAAGTAACAAGCAACAGGGTTCTTGCTTTGGATTTGTGGAATTTGAATCTGCTGCTTCACTGCAAAGTGCCCTAGAGGCCTCTCCTCCTGTTATGTTGGACAACCGTAGGCTTTCCATTGAAGAAAGGCGAGGACGTGGTGGATACCGAAATGACAGAAATGATAACTTCAGAGGCCGTGGCAACTTTGGTGGTGGCCGTGGTGGTGGCTTTAATGGAAGGAACGATTTTGACAGGCGAAGTGAGTTCTCTGGCCGGCCTAGAGGAGGCAATAATGCCGGTCGAAGCAATGGAGATGCTGCGCCAAGGAGTTATCAGAATGGAGGAGGAAAAGTCGCTCATCAACAACAGCCAGTGAAGGTTTAG 1359 0.4533 MAVSDGVQTPAPTTQMVGNAFVEQYYSILHRNPDQVHRFYHEESVMSRPEEDGTMTTVTTTAEIDKKLKSLDYTSFRVEVLSADAQPSYTNGVMVVVTGCLTGTDNVKRKFAQSFFLAPQDNGFYVLNDVFRYVDAYKSVDIEAVPANVADESAPAEAFTPVPEPIRVAEDIPPSQPAVIADTDTNISKEVSLPLENGKLSVTENVIPVNHVKESSHQEQPASIEKVPSNTQEDAPKKSFASIVNALKDNSAPFHLRTSPAKPAVQPHRVHSVPAPEAPAPNMDIPLERNNENGGRAHAIFVANLPMTATVEQLDRVFKKFGSIKRDGIQVRSNKQQGSCFGFVEFESAASLQSALEASPPVMLDNRRLSIEERRGRGGYRNDRNDNFRGRGNFGGGRGGGFNGRNDFDRRSEFSGRPRGGNNAGRSNGDAAPRSYQNGGGKVAHQQQPVKV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02011 452 CDD RRM_SF 300 372 - -
Trre7g02011 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 369 IPR000504 GO:0003723
Trre7g02011 452 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 427 IPR039539 -
Trre7g02011 452 MobiDBLite consensus disorder prediction 428 452 - -
Trre7g02011 452 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Trre7g02011 452 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Trre7g02011 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Trre7g02011 452 SMART rrm1_1 299 372 IPR000504 GO:0003723
Trre7g02011 452 MobiDBLite consensus disorder prediction 375 452 - -
Trre7g02011 452 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Trre7g02011 452 Gene3D - 286 413 IPR012677 -
Trre7g02011 452 MobiDBLite consensus disorder prediction 259 282 - -
Trre7g02011 452 FunFam Nuclear transport factor 2 family protein 8 137 - -
Trre7g02011 452 MobiDBLite consensus disorder prediction 213 235 - -
Trre7g02011 452 CDD NTF2 15 135 IPR018222 -
Trre7g02011 452 Gene3D - 6 138 - -
Trre7g02011 452 SUPERFAMILY RNA-binding domain, RBD 291 405 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02011 Trre-Chr7 15966956 15969982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02011 300 391 Eukaryotic Initiation Factors Gene Family AT1G34140 29.348 9.70e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02011 K24983 - gmx:100805610 583.178