Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g01991 | ATGCTGGGTGGGTTATACGGAGACCTACCTCCACCTTCTTCCGCCGAAGAAGAAAAACCAACCACCAATGTCTGGTCAAGTAGCACCAAAATGGCTCCAGCCACTCTCCGTAAACCTTCTTCTCTTTTCACACCTCCTCACACGCTTCTCAGATCCCAAAACAAACCTAAAATCACCAATTCCAAAACGGTTCTGTCTTCTGCACCACCTATACTTGCTCCGGCACTTGATGAGGTGATTCAACCGGCTCTGGTGGGAGTGCAGTCGACTGTGTTGGAGGAGTATGATCCGGCAAGGCCGAATGACTATGAGGAGTATAGGAGAGAGAAGAAGAGGAAGGCTAGGGAGGTGGAGATGATGAGGGAGCTGGAGAGACGGCGGGAGGAGGAGGAAGAGAGGGAGAGAGAAAGGGAGAGGGAGAGAGAGAAAGAAAGAGAAAGGGAGAGAGATAGGGATCAGGGTGATTCGAGGTTGAATATTTCGGGTGAGGAGGCGTGGAGGAGGCGTGTGGGGATGAGTGGCGGTGGTGGAGGTGGTGGTGCTGTGCCGAGGTCGCCATCGCCTCCGGGGAATGTGGATGGATTTACTATTGGGAAGTCGGAGACGGGTGGGTTAGGGGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCAAAGATGGGATGGAAGGAAGGGCAAGGGCTTGGGAAACAGGAGCAAGGGATTACTACTCCTTTGATGGCGAAGAAAACCGATAGACGAGCTGGTGTTATTGTCAATGCGAGTGACAGTAAGTCTGATAAGAAAGTCAAGAGTGTCAACATCAATGGGGTACCTACCAGAGTGCTGCTACTTAGAAACATGGTGGGGCCTGGCGAGGTAGATGATGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTTCCCACCGACGAAGCAGTGAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGTCGATACTTTGGGGGTAGAGTAGTCCGTGCCACATTTTATGATGAGGATAAGTTTGGCAAGAATGAGCTAGCTCCGATGCCAGGAGAAATTCCTGGCTTCACCTAG | 1149 | 0.5074 | MLGGLYGDLPPPSSAEEEKPTTNVWSSSTKMAPATLRKPSSLFTPPHTLLRSQNKPKITNSKTVLSSAPPILAPALDEVIQPALVGVQSTVLEEYDPARPNDYEEYRREKKRKAREVEMMRELERRREEEEEREREREREREKERERERDRDQGDSRLNISGEEAWRRRVGMSGGGGGGGAVPRSPSPPGNVDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEDKFGKNELAPMPGEIPGFT | 382 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g01991 | 382 | SMART | rrm2_1 | 278 | 359 | IPR003954 | GO:0003676 | |
| Trre7g01991 | 382 | FunFam | Putative splicing factor 45 | 276 | 362 | - | - | |
| Trre7g01991 | 382 | MobiDBLite | consensus disorder prediction | 16 | 61 | - | - | |
| Trre7g01991 | 382 | CDD | RRM_UHM_SPF45 | 275 | 371 | IPR034653 | - | |
| Trre7g01991 | 382 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Trre7g01991 | 382 | Pfam | G-patch domain | 215 | 254 | IPR000467 | GO:0003676 | |
| Trre7g01991 | 382 | SUPERFAMILY | RNA-binding domain, RBD | 279 | 365 | IPR035979 | GO:0003676 | |
| Trre7g01991 | 382 | PANTHER | SPLICING FACTOR 45 SPF45 | 1 | 373 | IPR040052 | GO:0045292 | |
| Trre7g01991 | 382 | PIRSF | SPF45 | 3 | 378 | IPR040052 | GO:0045292 | |
| Trre7g01991 | 382 | ProSiteProfiles | G-patch domain profile. | 212 | 258 | IPR000467 | GO:0003676 | |
| Trre7g01991 | 382 | SMART | G-patch_5 | 210 | 256 | IPR000467 | GO:0003676 | |
| Trre7g01991 | 382 | Gene3D | - | 273 | 371 | IPR012677 | - | |
| Trre7g01991 | 382 | MobiDBLite | consensus disorder prediction | 97 | 164 | - | - | |
| Trre7g01991 | 382 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 267 | 363 | IPR000504 | GO:0003723 | |
| Trre7g01991 | 382 | Coils | Coil | 103 | 153 | - | - | |
| Trre7g01991 | 382 | MobiDBLite | consensus disorder prediction | 93 | 206 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g01991 | Trre-Chr7 | 15794882 | 15798659 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g01991 | 218 | 253 | C2H2 Transcription Factor Family | AT5G26610 | 61.111 | 1.43e-06 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g01991 | K12840 | - | zju:107418861 | 512.686 |