Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01990 ATGACAAATATGCAAACGGATGGAATTAAGCCGCTTTCAGGAAAGCCATACTTTCATGTAATTATTTACAAAACACATCTCAGACCCCGTTATGCAGTGGGGCCGTCTAGCAATATATGCTCAACACTTCCTTTTGTAGCAGTTCCGACTATTCTCAACTGTCGTGGTAAGAGCTGGGAAATGACTTATAATGGCCAAAACAGAGGCAAGCTGTTTGATTCCAATGGCTGGGGAAATTTTGTTAAAGATAATAATTTGAAGCTTGGAGACGCCTGTGTTTTCGAGCTCATGGAGCACAGTAAAGATAAAATTGTCTTTGAAGTTCAAATTCTTAGAGGTAACTCCCCGTTTGAATTTTCTGGAATTGGTGATAGTGAAGAAGAGCCAATTGTTCTATCCGAATTTCCGGGAACTGGTGAGAGGGATGCACCCTTTGTCATTGACTAG 447 0.4094 MTNMQTDGIKPLSGKPYFHVIIYKTHLRPRYAVGPSSNICSTLPFVAVPTILNCRGKSWEMTYNGQNRGKLFDSNGWGNFVKDNNLKLGDACVFELMEHSKDKIVFEVQILRGNSPFEFSGIGDSEEEPIVLSEFPGTGERDAPFVID 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01990 148 CDD B3_DNA 50 112 IPR003340 GO:0003677
Trre7g01990 148 Pfam B3 DNA binding domain 51 107 IPR003340 GO:0003677
Trre7g01990 148 ProSiteProfiles B3 DNA-binding domain profile. 50 114 IPR003340 GO:0003677
Trre7g01990 148 Gene3D - 5 114 IPR015300 -
Trre7g01990 148 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 15 114 IPR044837 -
Trre7g01990 148 SMART B3_2 22 114 IPR003340 GO:0003677
Trre7g01990 148 SUPERFAMILY DNA-binding pseudobarrel domain 14 113 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01990 Trre-Chr7 15793130 15793847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01990 51 117 REM Transcription Factor Family AT4G31680 35.821 1.31e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre7g01990 B3 1.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01990 - - tpra:123884363 262.307