Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01982 ATGCTTCAGGACTTACCTGAACATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGATCCTGTTTATGGTTGTGTAGGGGCAATTTCGTCACTTCAGCAGCAAATTGATGTGCTACAGACCCAATTGGCTGTGGCCCAAGCTGAGGCAGTACACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGCCCAACTAGTCCAACCTATAGTGGCTCTCCATCATCCAAGATTAATGAATCACAACCCAAACACTCTATTTTTGATATGGACATGGTGGTGGACCAAGATGGGTGTTGTGGTGATCCAATTGGTTACTTCTAA 360 0.4583 MLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQPKHSIFDMDMVVDQDGCCGDPIGYF 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01982 119 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
Trre7g01982 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 89 - -
Trre7g01982 119 MobiDBLite consensus disorder prediction 69 95 - -
Trre7g01982 119 Coils Coil 36 56 - -
Trre7g01982 119 MobiDBLite consensus disorder prediction 69 96 - -
Trre7g01982 119 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01982 Trre-Chr7 15724880 15730618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01982 1 75 AS2 family AT1G31320 82.667 4.46e-30 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre7g01982 LOB 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01982 - - jre:108980655 153.68