Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01976 ATGGAAAGAGGCGGTTACAGAAACAAAACTGGTGGCCGTGACGGTTATGGTGGTGGTGGCCGTAACGGTTATGGTGGTGGTGGCCGTAGCGGCAATGGTGGTGATGGTGGTGGTAGAGGAAGGGGAAGGGGAAGAGGAAGAGAAAGAGAGTTTTATCCGCAACCCCAATCCAGTCCCGGTGGTGGTGGTGGTGGCCGAGGGTTTCCTCAACATCCGCCAAACTGCTGGCAACCAAGGCCAAATCCACCATCACCCGTCACCCACCCAAATTCATCATCGGTTACTCCTCCTTTCACTCCGTTCGACAACAGTCAACACCAAGTCCGTACTCTTCCGCGTCAAGATAATGTGGCTCCGAAATTAAAAGAGCAGAAAGCGGAAACTACTACAATTGGACCTATCCACCGGCCTGACAAGGGAGGGACGGTGTCAGTTCGAAACTGCAAACTTCGTGTGAATCATTTTCCGGTTACCTTCAATCCACAAAGCATTATTATGCACTACAATGTGGATGTGAAGGCTACCGTGCCACCGAAAAAGGGTTTGCCTCCAAAGAAGATTTCTAAGTTTGACTTGTCTATGATCAGGGACCAATTGTTTGCTGATCATCCTGAGACACTGCCTTTGTTGAAGACTGCTTATGATGGAGAGAAAAGCATCTTTAGTGCTGTGCGATTGCCCGAAGAAACTTTTACTGTGGAGGTCTCAAAAGGAGAAGATGAAAGAGCTGTTTCTTATACAGTAACTATAACACTGGTGAACAAACTCGAGCTTCGCAAGTTGAGAGATTACCTTAGTGGCACCGTCTATTCCATTCCGAGGGAAATTTTACATGGAATGGACTTGGTGGTGAAGGAGAATCCGGCAAGGAGCACAATTGCTTTAGGAAGATATTTCTTTCCCAACAATCCTCCCTTGGTGGAGAGGGATCTTGAACCCGGAATAATTGCAATTGGAGGGTTTCAACATAGTCTCAAGACCACGGCTCAGGGTTTATCTTTGTGTCTTGACACTTCAGTTTTGTCTTTCCGAAAGAAAATGCCAGTCTTGGATTTCCTCCGTTATCGGATTAAGGGTTTTAATTTGGCTGAGTTTTGGAAATATAAGAAAGCTGTCGAGAATGAACTCATTGGATTGAAAGTAAATGTCACTCACAGGAGAACCAAACAGAAATACACCATTACTAGGTTAACACCTAAAGATACACGCCATATCACTTTCCCTATTTTGGACCAAGATGGCCAAAACCCCACTGAAACAATCTCTCTTGTTGACTACTTTGAAAGTAAATATGAGCGCAATATTGTAAACAAAGATATTCCTGCCTTGGATTTTGGGGGAAAGAAGACTAATTTTGTGCCTATGGAGCTATGTGTCTTGGTTGAGGGTCAGAGATTTCCCAAAGAGTATTTGGACAAGAATTCTGCCAAGAACTTGAAAAATATGTGCTTGGCTAGTCCAAGGGAGCGGCAATCTACAATACAAATGATGATGAAGTCTGGTGATGGACCTTGCGGCGGTGGTATTCTTAAGAATTTTGGAATGAATGTCAACACTTCCATGACAAATGTGACCGGACGCGTGATTGTGCCTCCAGTATTGAAGTTAAGTGATCCACGTGGAAGGACTACATCTATTAATCTGGTTCCAGAGAAATGCCAATGGAATCTAGTTGGAAAGTCAATGGTAGAAGGAAAACCTGTTGAGTGTTGGGGCATCCTTGATTTTACCAGCAATGGACCTGGTTGGTGCAGATTAAGAGGCGATCAGTTTGTTAATAATCTTATGGATAAGTACCGAAAGTTGGGCATTGGCATGAAGGAACCTGTTTGTTATGAGAATTCTACAATGCGGATACTCGGGGATTACAATTCACTAAGTGACTTACTTGAAAAAATAAATGATAAGGTTCAAAAAAACTGTCGACAGCGGCTGCAATTTCTTCTTTGTGTGATGGCCAACAGGGATCATGGTTACAAGTGCCTCAAGTGGATTGCTGATACCAAGATTGGCATAGTGACACAGTGCTGCTTATCTGGTAGTGCTAATGAAGGGAAAGACCAATATCTGACAAATCTTGCTCTAAAAATCAATGCAAAAATTGGAGGAAGTAATGTGGAGCTCATTAATAGGCTCCCACACTTTGAGGATGATAGTCCTGTTATGTTTATAGGTGCTGATGTCAATCATCCAGCCTCTCGGGACATAGATAGTCCATCAATTGCTGCGGTGGTTGCAACTACTAACTGGCCCGCTGCAAATCGCTACGCAGCACGTGTTTGCTTTCAAGAGCATCGAAAGGAGAAAATTTTGAATTTTGGAGAAGTTTGCCTTGACCTTGTTACACATTATGAGAAATTGAACAAAGTCAGACCCCAAAAAATTGTTATCTTTCGTGACGGTGTTAGTGACAGTCAATTTGACATGGTTCTTGGTCAGGAGTTGAAAGATTTGAAGACTGTTTTTCAGCGCTCGAATTACTTTCCAACTATCACTCTTATTGTAGCCCAAAAGCGACATCAAACTCGATTGTTTCCTACTGGTCCGAATGAAGGGACTCCTAATGGTAATGTGTTCCCTGGAACAGTTGTGGACACAACGGTCGTACATCCGTTTGAATTTGATTTTTACCTTTGTAGTCACTTTGGAAGCCTAGGTACAAGCAAGCCTACTCACTATCATGTCTTGTGGGATGAGCACAAATTTACTTCTGATGATTTGCAGAAACTCATTTATGATTTGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCATATAGAGGAAGGCTATACTATGAAGCAAAGATGTCGGCACAATCTCCAGATTCAACTGTGTCTTCTTCTTCTTCTTCTTCATCATATTTAGCTTCATCGTTTTCTTCCGCCACCTCAATTTCAAATGATCCCTTTTACAAGTTGCATCCTAATACAGAAAACAGAATGTTTTTTGTCTGA 2994 0.4289 MERGGYRNKTGGRDGYGGGGRNGYGGGGRSGNGGDGGGRGRGRGRGREREFYPQPQSSPGGGGGGRGFPQHPPNCWQPRPNPPSPVTHPNSSSVTPPFTPFDNSQHQVRTLPRQDNVAPKLKEQKAETTTIGPIHRPDKGGTVSVRNCKLRVNHFPVTFNPQSIIMHYNVDVKATVPPKKGLPPKKISKFDLSMIRDQLFADHPETLPLLKTAYDGEKSIFSAVRLPEETFTVEVSKGEDERAVSYTVTITLVNKLELRKLRDYLSGTVYSIPREILHGMDLVVKENPARSTIALGRYFFPNNPPLVERDLEPGIIAIGGFQHSLKTTAQGLSLCLDTSVLSFRKKMPVLDFLRYRIKGFNLAEFWKYKKAVENELIGLKVNVTHRRTKQKYTITRLTPKDTRHITFPILDQDGQNPTETISLVDYFESKYERNIVNKDIPALDFGGKKTNFVPMELCVLVEGQRFPKEYLDKNSAKNLKNMCLASPRERQSTIQMMMKSGDGPCGGGILKNFGMNVNTSMTNVTGRVIVPPVLKLSDPRGRTTSINLVPEKCQWNLVGKSMVEGKPVECWGILDFTSNGPGWCRLRGDQFVNNLMDKYRKLGIGMKEPVCYENSTMRILGDYNSLSDLLEKINDKVQKNCRQRLQFLLCVMANRDHGYKCLKWIADTKIGIVTQCCLSGSANEGKDQYLTNLALKINAKIGGSNVELINRLPHFEDDSPVMFIGADVNHPASRDIDSPSIAAVVATTNWPAANRYAARVCFQEHRKEKILNFGEVCLDLVTHYEKLNKVRPQKIVIFRDGVSDSQFDMVLGQELKDLKTVFQRSNYFPTITLIVAQKRHQTRLFPTGPNEGTPNGNVFPGTVVDTTVVHPFEFDFYLCSHFGSLGTSKPTHYHVLWDEHKFTSDDLQKLIYDLCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEAKMSAQSPDSTVSSSSSSSSYLASSFSSATSISNDPFYKLHPNTENRMFFV 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01976 997 SUPERFAMILY Ribonuclease H-like 631 946 IPR012337 -
Trre7g01976 997 Pfam Piwi domain 649 945 IPR003165 GO:0003676
Trre7g01976 997 Gene3D - 715 997 IPR036397 GO:0003676
Trre7g01976 997 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 145 948 - -
Trre7g01976 997 SUPERFAMILY PAZ domain 343 499 IPR036085 GO:0005515
Trre7g01976 997 ProSiteProfiles Piwi domain profile. 647 946 IPR003165 GO:0003676
Trre7g01976 997 CDD PAZ_argonaute_like 347 461 - -
Trre7g01976 997 MobiDBLite consensus disorder prediction 1 142 - -
Trre7g01976 997 MobiDBLite consensus disorder prediction 91 112 - -
Trre7g01976 997 SMART DUF1785_2 293 346 IPR014811 -
Trre7g01976 997 Gene3D paz domain 342 466 - -
Trre7g01976 997 ProSiteProfiles PAZ domain profile. 372 462 IPR003100 GO:0005515
Trre7g01976 997 SMART Piwi_a_2 647 946 IPR003165 GO:0003676
Trre7g01976 997 Pfam Argonaute linker 1 domain 295 345 IPR014811 -
Trre7g01976 997 SMART PAZ_2_a_3 347 485 IPR003100 GO:0005515
Trre7g01976 997 Gene3D - 528 709 - -
Trre7g01976 997 MobiDBLite consensus disorder prediction 73 90 - -
Trre7g01976 997 CDD Piwi_ago-like 509 945 IPR045246 -
Trre7g01976 997 Pfam PAZ domain 367 474 IPR003100 GO:0005515
Trre7g01976 997 Pfam N-terminal domain of argonaute 146 283 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01976 Trre-Chr7 15662867 15667473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01976 123 996 Eukaryotic Initiation Factors Gene Family AT1G48410 33.441 7.45e-141 446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01976 7 15662867 15667473 Trre7g01976 7 15662867 15667473 ECH
Trre7g01976 7 15662867 15667473 Trre15g02563 15 21531132 21533742 PCT