Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01975 ATGGAAAGAGGCGGTTACAGAAACAAAACTGGTGGCCGTGACGGTTATGGTGGTGGTGGCCGAAGGGGAAGGGGAAGAGGAAGAGAAAGAGAGTTTTATCCGCAACCCCAATCCAGTCCCGGTGGTGGTGGTGGTGGCCGAGGGTTTCCTCAACATCCGCCAAACTGCTGGCAACCAAGGCCAAATCCACCATCACCCGTCACCCACCCAAATTCATCATCGGTTACTCCTCCTTTCACTCCGTTCGACAACAGTCAACACCAAGTCCGTACTCTTCCGCGTCAAGATAATGTGGCTCCGAAATTAAAAGAGCAGAAAGCGGAAACTACTACAATTGGACCTATCCACCGGCCTGACAAGGGAGGGACGGTGTCAGTTCGAAACTGCAAACTTCGTGTGAATCATTTTCCGGTTACCTTCAATCCACAAAGCATTATTATGCACTACAATGTGGATGTGAAGGCTACCGTGCCACCGAAAAAGGGTTTGCCTCCAAAGAAGATTTCTAAGTTTGACTTGTCTATGATCAGGGACCAATTGTTTGCTGATCATCCTGAGACACTGCCTTTGTTGAAGACTGCTTATGATGGAGAGAAAAGCATCTTTAGTGCTGTGCGATTGCCCGAAGAAACTTTTACTGTGGAGGTCTCAAAAGGAGAAGATGAAAGAGCTGTTTCTTATACAGTAACTATAACACTGGTGAACAAACTCGAGCTTCGCAAGTTGAGAGATTACCTTAGTGGCACCGTCTATTCCATTCCGAGGGAAATTTTACATGGAATGGACTTGGTGGTGAAGGAGAATCCGGCAAGGAGCACAATTGCTTTAGGAAGATATTTCTTTCCCAACAATCCTCCCTTGGTGGAGAGGGATCTTGAACCCGGAATAATTGCAATTGGAGGGTTTCAACATAGTCTCAAGACCACGGCTCAGGGTTTATCTTTGTGTCTTGACACTTCAGTTTTGTCTTTCCGAAAGAAAATGCCAGTCTTGGATTTCCTCCGTTATCGGATTAAGGGTTTTAATTTGGCTGAGTTTTGGAAATATAAGAAAGCTGTCGAGAATGAACTCATTGGATTGAAAGTAAATGTCACTCACAGGAGAACCAAACAGAAATACACCATTACTAGGTTAACACCTAAAGATACACGCCATATCACTTTCCCTATTTTGGACCAAGATGGCCAAAACCCCACTGAAACAATCTCTCTTGTTGACTACTTTGAAAGTAAATATGAGCGCAATATTGTAAACAAAGATATTCCTGCCTTGGATTTTGGGGGAAAGAAGACTAATTTTGTGCCTATGGAGCTATGTGTCTTGGTTGAGGGTCAGAGATTTCCCAAAGAGTATTTGGACAAGAATTCTGCCAAGAACTTGAAAAATATGTGCTTGGCTAGTCCAAGGGAGCGGCAATCTACAATACAAATGATGATGAAGTCTGGTGATGGACCTTGCGGCGGTGGTATTCTTAAGAATTTTGGAATGAATGTCAACACTTCCATGACAAATGTGACCGGACGCGTGATTGTGCCTCCAGTATTGAAGTTAAGTGATCCACGTGGAAGGACTACATCTATTAATCTGGTTCCAGAGAAATGCCAATGGAATCTAGTTGGAAAGTCAATGGTAGAAGGAAAACCTGTTGAGTGTTGGGGCATCCTTGATTTTACCAGCAATGGACCTGGTTGGTGCAGATTAAGAGGCGATCAGTTTGTTAATAATCTTATGGATAAGTACCGAAAGTTGGGCATTGGCATGAAGGAACCTGTTTGTTATGAGAATTCTACAATGCGGATACTCGGGGATTACAATTCACTAAGTGACTTACTTGAAAAAATAAATGATAAGGTTCAAAAAAACTGTCGACAGCGGCTGCAATTTCTTCTTTGTGTGATGGCCAACAGGGATCATGGTTACAAGTGCCTCAAGTGGATTGCTGATACCAAGATTGGCATAGTGACACAGTGCTGCTTATCTGGTAGTGCTAATGAAGGGAAAGACCAATATCTGACAAATCTTGCTCTAAAAATCAATGCAAAAATTGGAGGAAGTAATGTGGAGCTCATTAATAGGCTCCCACACTTTGAGGATGATAGTCCTGTTATGTTTATAGGTGCTGATGTCAATCATCCAGCCTCTCGGGACATAGATAGTCCATCAATTGCTGCGGTGGTTGCAACTACTAACTGGCCCGCTGCAAATCGCTACGCAGCACGTGTTTGCTTTCAAGAGCATCGAAAGGAGAAAATTTTGAATTTTGGAGAAGTTTGCCTTGACCTTGTTACACATTATGAGAAATTGAACAAAGTCAGACCCCAAAAAATTGTTATCTTTCGTGACGGTGTTAGTGACAGTCAATTTGACATGGTTCTTGGTCAGGAGTTGAAAGATTTGAAGACTGTTTTTCAGCGCTCGAATTACTTTCCAACTATCACTCTTATTGTAGCCCAAAAGCGACATCAAACTCGATTGTTTCCTACTGGTCCGAATGAAGGGACTCCTAATGGTAATGTGTTCCCTGGAACAGTTGTGGACACAACGGTCGTACATCCGTTTGAATTTGATTTTTACCTTTGTAGTCACTTTGGAAGCCTAGGTACAAGCAAGCCTACTCACTATCATGTCTTGTGGGATGAGCACAAATTTACTTCTGATGATTTGCAGAAACTCATTTATGATTTGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCATATAGAGGAAGGCTATACTATGAAGCAAAGATGTCGGCACAATCTCCAGATTCAACTGTGTCTTCTTCTTCTTCTTCTTCATCATATTTAGCTTCATCGTTTTCTTCCGCCACCTCAATTTCAAATGATCCCTTTTACAAGTTGCATCCTAATACAGAAAACAGAATGTTTTTTGTCTGA 2937 0.4259 MERGGYRNKTGGRDGYGGGGRRGRGRGREREFYPQPQSSPGGGGGGRGFPQHPPNCWQPRPNPPSPVTHPNSSSVTPPFTPFDNSQHQVRTLPRQDNVAPKLKEQKAETTTIGPIHRPDKGGTVSVRNCKLRVNHFPVTFNPQSIIMHYNVDVKATVPPKKGLPPKKISKFDLSMIRDQLFADHPETLPLLKTAYDGEKSIFSAVRLPEETFTVEVSKGEDERAVSYTVTITLVNKLELRKLRDYLSGTVYSIPREILHGMDLVVKENPARSTIALGRYFFPNNPPLVERDLEPGIIAIGGFQHSLKTTAQGLSLCLDTSVLSFRKKMPVLDFLRYRIKGFNLAEFWKYKKAVENELIGLKVNVTHRRTKQKYTITRLTPKDTRHITFPILDQDGQNPTETISLVDYFESKYERNIVNKDIPALDFGGKKTNFVPMELCVLVEGQRFPKEYLDKNSAKNLKNMCLASPRERQSTIQMMMKSGDGPCGGGILKNFGMNVNTSMTNVTGRVIVPPVLKLSDPRGRTTSINLVPEKCQWNLVGKSMVEGKPVECWGILDFTSNGPGWCRLRGDQFVNNLMDKYRKLGIGMKEPVCYENSTMRILGDYNSLSDLLEKINDKVQKNCRQRLQFLLCVMANRDHGYKCLKWIADTKIGIVTQCCLSGSANEGKDQYLTNLALKINAKIGGSNVELINRLPHFEDDSPVMFIGADVNHPASRDIDSPSIAAVVATTNWPAANRYAARVCFQEHRKEKILNFGEVCLDLVTHYEKLNKVRPQKIVIFRDGVSDSQFDMVLGQELKDLKTVFQRSNYFPTITLIVAQKRHQTRLFPTGPNEGTPNGNVFPGTVVDTTVVHPFEFDFYLCSHFGSLGTSKPTHYHVLWDEHKFTSDDLQKLIYDLCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEAKMSAQSPDSTVSSSSSSSSYLASSFSSATSISNDPFYKLHPNTENRMFFV 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01975 978 SMART DUF1785_2 274 327 IPR014811 -
Trre7g01975 978 Pfam Piwi domain 630 926 IPR003165 GO:0003676
Trre7g01975 978 Pfam PAZ domain 348 455 IPR003100 GO:0005515
Trre7g01975 978 MobiDBLite consensus disorder prediction 1 123 - -
Trre7g01975 978 MobiDBLite consensus disorder prediction 54 71 - -
Trre7g01975 978 ProSiteProfiles PAZ domain profile. 353 443 IPR003100 GO:0005515
Trre7g01975 978 Gene3D - 696 978 IPR036397 GO:0003676
Trre7g01975 978 CDD PAZ_argonaute_like 328 442 - -
Trre7g01975 978 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 126 929 - -
Trre7g01975 978 MobiDBLite consensus disorder prediction 72 93 - -
Trre7g01975 978 SMART PAZ_2_a_3 328 466 IPR003100 GO:0005515
Trre7g01975 978 SUPERFAMILY Ribonuclease H-like 612 927 IPR012337 -
Trre7g01975 978 CDD Piwi_ago-like 490 926 IPR045246 -
Trre7g01975 978 ProSiteProfiles Piwi domain profile. 628 927 IPR003165 GO:0003676
Trre7g01975 978 Pfam Argonaute linker 1 domain 276 326 IPR014811 -
Trre7g01975 978 Gene3D - 509 690 - -
Trre7g01975 978 SMART Piwi_a_2 628 927 IPR003165 GO:0003676
Trre7g01975 978 Pfam N-terminal domain of argonaute 127 264 IPR032474 -
Trre7g01975 978 SUPERFAMILY PAZ domain 324 480 IPR036085 GO:0005515
Trre7g01975 978 Gene3D paz domain 323 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01975 Trre-Chr7 15662867 15667473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01975 104 977 Eukaryotic Initiation Factors Gene Family AT1G48410 33.441 3.99e-141 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01975 K11593 - gmx:100805250 1311.59