LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g01934	ATGGAGAACATTTTAGGTCTTATCAGACTTCGTATAAAAAAAGGCACTAATCTCATACCTCGTGATTCTCGTACCAGTGACCCTTATGTTGTTCTCACCATGGCTGAACAGACACTGAAAACTGGTGTTGTCAAAGATAACTTACATCCTGAATGGAATGAAGAATTAACACTTTATATTCAAGATAAAGATCTTAACACACCAATACAACTGACAGTTTGCGACAAAGACACTTTCACTGTGGATGACAAAATGGGCGAAGCAGACATAGACATAAAACCATATCTTCAATGCGTGAAGATGGGATTGAACGATCTTCCAGATGGACATGTAGTCAAAACAATTCAACCAGATAGGACGAATTGCCTTGCCGAAGAAAGTAGCTGCATATGGAGAAATGGAAAAGTTGTCCAAGAAATGAGTTTAAGATTGAGAAACGTTAAGTCTGGTGAAGTACTCGTCGAAATTGAGTGGATCGATGTTACAGATTCCAAAGGCTTATCAGAAGTTGAGATTTAG	519	0.3834	MENILGLIRLRIKKGTNLIPRDSRTSDPYVVLTMAEQTLKTGVVKDNLHPEWNEELTLYIQDKDLNTPIQLTVCDKDTFTVDDKMGEADIDIKPYLQCVKMGLNDLPDGHVVKTIQPDRTNCLAEESSCIWRNGKVVQEMSLRLRNVKSGEVLVEIEWIDVTDSKGLSEVEI	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g01934	172	Gene3D	C2 domain	4	170	IPR035892	-
	Trre7g01934	172	Pfam	C2 domain	7	94	IPR000008	-
	Trre7g01934	172	ProSiteProfiles	C2 domain profile.	1	105	IPR000008	-
	Trre7g01934	172	SMART	C2_3c	7	104	IPR000008	-
	Trre7g01934	172	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	2	160	IPR035892	-
	Trre7g01934	172	PANTHER	PROTEIN C2-DOMAIN ABA-RELATED 4	3	165	IPR044562	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g01934	Trre-Chr7	15261191	15262594	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g01934	39	168	C2H2 Transcription Factor Family	AT1G70790	56.061	2.59e-45	144

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g01934	-		-	gmx:100781585	280.796

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre7g01934	7	15261191	15262594	Trre7g01934	7	15261191	15262594	ECH
	Trre7g01934	7	15261191	15262594	Trre11g02077	11	23500971	23505047	ECH
	Trre7g01934	7	15261191	15262594	Trre5g01849	5	13735890	13737797	ECH