Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01923 ATGTACAAGTTGACCTTACTTCGTTACCTTAACGTACTTTCTTTCTTACTATATCATAGACCTTCGCCACTTCAAATAAGCGCTTCGCTTCGCCCTTTATTTTTTTGTTCAGTTCAGTTTTGCTGTGAGTTCTCCATCTGCTGCTCCCACGCAACAACCCTTCTGATTGAAATGGAAATCAGTAGCGGCAATAACAGCAGTAACATGATGTGGTTTTTCAAAGATAGAGGTTTTGATGATACCATCATAAAAGCAATGTTCAAAAAATGTAAGCGTCTCGAGACGGCGCAACGCGAAAGAGCGGATGAGAATTGGGAGTATTTGAAAACAATTGGAATTTTAGAAAGGAAACTTCCTTCAATTGTTTCAAAATGTCCTAAGATTCTTGTACTTGGTCTTAATGAGAAAATTCTCCCTATGGTTGAATGTCTCAACACACTTGCAACAAAACCTAATGAAGTTGCATCTGCCATAGCTAAGTTCCCTCACATACTCTCTTATAGTGTGGAAGAGAAGCTTTGTCCTCTTTTGGCGTTTTTTCAGGCATTAGGCGTCCCTGAGAAACAAATCGGTAAAATTTTACTGCTAAACCCTAGGCTTATTAGTTACAGTATTGAGACAAAGATGGGGGAAATTGTGAAATTTCTTTCCAGCATTGGTCTTGATAAAGACGGAATGATTGGAAAAATTATGGTTAAGGATCCGTTTATTATGGGTTATAGTGTTGATAAAAGGCTTCGCCCTACTTCGGAGTTTTTGAAGTCAATTGGTTTGACTGAGCAGGATCTTCAAGTTATAGCCTTGAATTTCCCGTCGATTTTGAGTAGAGACGTGAACAAGGTTTTGGTACACAATTATGATTATTTAAAGAACCGTGGATTTCAAGGGCGACAGATAGTTGATTTGGTAGTTGGTTTTCCTCCTGTTTTGATCAAGAGCGTTCGGAATTCTTTAGAACCAAGGATCAAGTTCTTAGTTGATGTAATGGGGAGAGAAGTCGATGAAATCATTGATTATCCATGCTTCTTTCGTCATGGCTTGAAGAAAAAATTAGTGTCGCGGCACAAACTCCTACAGAAGAGGAATTTAAATTGCAGCTTGAGTGAAATGCTTGACTGTAATGAGAAGAAGTTCCACTTGAAGTTCGGCTTGTTAGAAGGACATGCGTTGAGTAACTAG 1179 0.3876 MYKLTLLRYLNVLSFLLYHRPSPLQISASLRPLFFCSVQFCCEFSICCSHATTLLIEMEISSGNNSSNMMWFFKDRGFDDTIIKAMFKKCKRLETAQRERADENWEYLKTIGILERKLPSIVSKCPKILVLGLNEKILPMVECLNTLATKPNEVASAIAKFPHILSYSVEEKLCPLLAFFQALGVPEKQIGKILLLNPRLISYSIETKMGEIVKFLSSIGLDKDGMIGKIMVKDPFIMGYSVDKRLRPTSEFLKSIGLTEQDLQVIALNFPSILSRDVNKVLVHNYDYLKNRGFQGRQIVDLVVGFPPVLIKSVRNSLEPRIKFLVDVMGREVDEIIDYPCFFRHGLKKKLVSRHKLLQKRNLNCSLSEMLDCNEKKFHLKFGLLEGHALSN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01923 392 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 154 386 - -
Trre7g01923 392 PANTHER CGI-12 PROTEIN-RELATED 189 310 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 Pfam mTERF 170 378 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 Pfam mTERF 66 179 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 Gene3D Transcription termination factor 3, mitochondrial 152 386 IPR038538 -
Trre7g01923 392 SMART mt_12 84 114 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 SMART mt_12 155 186 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 SMART mt_12 300 332 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 SMART mt_12 191 222 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 SMART mt_12 333 364 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 SMART mt_12 119 150 IPR003690 GO:0003690|GO:0006355
Trre7g01923 392 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01923 Trre-Chr7 15123957 15125682 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre7g01923 mTERF 3.8e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01923 K15032 - gmx:100816929 538.495